Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   EL064_RS05285 Genome accession   NZ_LR134178
Coordinates   1223003..1224262 (+) Length   419 a.a.
NCBI ID   WP_115704044.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC12450     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218003..1229262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL064_RS05275 (NCTC12450_01113) - 1218543..1220204 (-) 1662 WP_197718829.1 POTRA domain-containing protein -
  EL064_RS05280 (NCTC12450_01114) mutS 1220301..1222838 (-) 2538 WP_115704046.1 DNA mismatch repair protein MutS -
  EL064_RS05285 (NCTC12450_01115) lqsT 1223003..1224262 (+) 1260 WP_115704044.1 HAMP domain-containing sensor histidine kinase Regulator
  EL064_RS05290 (NCTC12450_01116) - 1224506..1225222 (-) 717 WP_115704042.1 iron-containing redox enzyme family protein -
  EL064_RS18955 (NCTC12450_01117) - 1225409..1226780 (+) 1372 Protein_1053 glutamine synthetase -
  EL064_RS05300 (NCTC12450_01119) - 1226951..1228339 (+) 1389 WP_115704038.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 48392.87 Da        Isoelectric Point: 8.5186

>NTDB_id=1118805 EL064_RS05285 WP_115704044.1 1223003..1224262(+) (lqsT) [Legionella sainthelensi strain NCTC12450]
MKRLKESLLIIYQYLSKQTEDASHQITLFGIVMMINYPLFGVFWKFESFQLSEEFCLRLIATFLCACLALNRFWPRFLLK
WLPVFWYLVLLFCLPYFFCYLTLINHCSTLWLMNCVSAIFFLLLVTSALGSLILIFGGCGLAFFSYFLTHRVMEYIPGTI
SLFSLSMTCVAAAVIGVLFARDREIIIAGRLSGMRMFASSIAHDLRTPLASIYLQAELQGIILNKIKNSEIRNDLQESLN
KITRGIETSNRIISMQLSNIRHNKFNTSNFSIYPIHNLIERAVDDYPLKETQKSLIHVNYENNFSIWLEELAFKNLLWNL
LKNSLEYIEETGKGIISIWLEIGVGKDNFNYLHVKDTARGIYSKNFGKIFERFYSERQNGTGLGLAYCKLLMQEAGGDIF
CKGKLNEFAHFTVKFPKID

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1118805 EL064_RS05285 WP_115704044.1 1223003..1224262(+) (lqsT) [Legionella sainthelensi strain NCTC12450]
ATGAAGCGGTTAAAAGAGAGTTTACTTATTATTTATCAATATCTATCGAAGCAGACAGAAGATGCAAGTCATCAAATTAC
ATTATTTGGCATTGTGATGATGATCAACTATCCGTTATTTGGTGTTTTTTGGAAATTCGAAAGTTTTCAACTGAGTGAAG
AGTTTTGTTTACGGCTTATCGCTACTTTTCTTTGTGCTTGTTTGGCTTTAAATCGATTTTGGCCACGTTTCTTATTGAAG
TGGCTACCTGTTTTTTGGTATCTCGTTTTATTATTTTGTTTGCCCTACTTCTTTTGCTATTTAACACTTATCAATCATTG
CTCTACGTTGTGGTTAATGAATTGTGTTTCTGCTATTTTTTTTCTTTTATTGGTAACGAGTGCTTTAGGATCTCTTATTC
TCATTTTTGGAGGATGTGGGCTTGCTTTTTTCTCTTATTTTCTAACGCACCGGGTTATGGAATATATACCAGGTACCATT
TCATTATTTAGCCTATCGATGACGTGCGTTGCAGCAGCTGTGATTGGTGTTTTGTTCGCTCGGGATAGAGAAATAATTAT
TGCAGGTCGTCTCTCGGGGATGCGTATGTTCGCGAGCAGTATTGCACATGATCTGCGTACACCACTAGCGAGTATTTATT
TGCAAGCTGAGTTACAGGGAATTATTTTGAATAAAATCAAAAACTCCGAGATACGAAACGATTTGCAAGAAAGTTTGAAT
AAGATTACTCGTGGGATAGAAACCAGTAATCGCATCATTAGCATGCAGTTAAGTAATATACGCCATAATAAGTTCAACAC
AAGTAATTTTAGTATTTACCCAATCCATAATTTAATTGAAAGGGCTGTCGATGATTATCCATTAAAAGAAACACAAAAGT
CGCTTATTCATGTTAATTATGAAAATAATTTCTCCATTTGGTTAGAAGAGTTAGCGTTTAAGAATCTCCTATGGAATTTA
TTAAAAAATAGTCTTGAGTACATTGAAGAAACAGGTAAGGGTATTATCTCTATTTGGTTGGAAATTGGTGTTGGAAAAGA
TAATTTCAATTACCTTCACGTTAAGGATACAGCTCGAGGAATCTACTCTAAAAATTTCGGAAAAATATTTGAACGCTTCT
ACTCTGAACGTCAAAATGGTACGGGTTTAGGGCTGGCTTATTGCAAATTGCTGATGCAAGAAGCAGGCGGTGATATTTTT
TGTAAGGGGAAATTAAATGAATTTGCTCATTTTACTGTAAAATTTCCTAAAATTGATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(195-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(311-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

71.19

100

0.714

Multiple sequence alignment