Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   EL022_RS15010 Genome accession   NZ_LR134173
Coordinates   3502040..3502564 (+) Length   174 a.a.
NCBI ID   WP_028379796.1    Uniprot ID   A0A0W0SAM7
Organism   Legionella cherrii strain NCTC11976     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497040..3507564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS14995 (NCTC11976_03119) - 3497343..3498863 (-) 1521 WP_028379799.1 glycosyltransferase family 39 protein -
  EL022_RS15000 (NCTC11976_03120) - 3499201..3500532 (+) 1332 WP_028379798.1 hypothetical protein -
  EL022_RS15005 (NCTC11976_03121) - 3500709..3501698 (+) 990 WP_028379797.1 polysaccharide deacetylase family protein -
  EL022_RS15010 (NCTC11976_03122) fimT 3502040..3502564 (+) 525 WP_028379796.1 GspH/FimT family protein Machinery gene
  EL022_RS15015 (NCTC11976_03123) pilV 3502577..3503122 (+) 546 WP_028379795.1 type IV pilus modification protein PilV -
  EL022_RS15020 (NCTC11976_03124) - 3503119..3504186 (+) 1068 WP_028379794.1 PilW family protein -
  EL022_RS15025 (NCTC11976_03125) - 3504243..3504773 (+) 531 WP_193392440.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18299.09 Da        Isoelectric Point: 7.5733

>NTDB_id=1118785 EL022_RS15010 WP_028379796.1 3502040..3502564(+) (fimT) [Legionella cherrii strain NCTC11976]
MLVKKAAFTLIELLITLLVLCVALVIALPALSNMLMNNRLTAYTDMFVNALNYARNNALNKSMNVIVCPFGAAQSTTCGG
NWGSGWIVVTQPTAGAGTLLQSQQFFPSDPTLSGTVASVTFDPHGLTSTPSNFKFCDSRGGTFARSIEVLATGFVQSGST
PGQAVWDNSALACP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1118785 EL022_RS15010 WP_028379796.1 3502040..3502564(+) (fimT) [Legionella cherrii strain NCTC11976]
ATGTTAGTTAAGAAGGCAGCTTTTACCTTAATTGAGCTTCTGATAACCTTATTGGTACTCTGCGTTGCGTTAGTTATAGC
GCTTCCGGCGTTAAGTAATATGCTCATGAACAATCGTTTAACCGCTTACACCGATATGTTTGTGAATGCATTGAATTATG
CGCGCAACAATGCCCTTAATAAATCAATGAATGTGATCGTTTGCCCGTTCGGAGCAGCGCAATCTACTACGTGTGGCGGA
AATTGGGGATCTGGATGGATAGTAGTAACCCAGCCTACAGCAGGTGCAGGTACCTTATTGCAAAGCCAACAATTTTTTCC
CTCAGATCCTACACTTTCAGGTACTGTGGCGAGCGTAACTTTTGATCCTCATGGATTAACCTCCACGCCGAGTAATTTCA
AATTTTGTGACAGTCGAGGTGGAACATTTGCACGCTCTATAGAGGTGTTGGCAACTGGATTTGTCCAATCTGGTTCAACA
CCCGGGCAAGCTGTCTGGGACAACAGCGCACTTGCATGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type II transport protein GspH (GspH)

(46-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0SAM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

59.763

97.126

0.58

Multiple sequence alignment