Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EL022_RS13330 Genome accession   NZ_LR134173
Coordinates   3128331..3128660 (-) Length   109 a.a.
NCBI ID   WP_028380100.1    Uniprot ID   -
Organism   Legionella cherrii strain NCTC11976     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3123331..3133660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS13305 (NCTC11976_02774) - 3124050..3124748 (-) 699 WP_028380104.1 hypothetical protein -
  EL022_RS13310 (NCTC11976_02775) - 3124893..3125441 (+) 549 WP_028380103.1 pseudouridine synthase -
  EL022_RS13315 (NCTC11976_02776) mreD 3125531..3126010 (-) 480 WP_028380102.1 rod shape-determining protein MreD -
  EL022_RS13320 (NCTC11976_02777) mreC 3126010..3126915 (-) 906 WP_028380101.1 rod shape-determining protein MreC -
  EL022_RS13325 (NCTC11976_02778) - 3126893..3127930 (-) 1038 WP_003636696.1 rod shape-determining protein -
  EL022_RS13330 (NCTC11976_02779) comEA 3128331..3128660 (-) 330 WP_028380100.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL022_RS13335 (NCTC11976_02780) - 3128912..3130321 (-) 1410 WP_028380099.1 M20 family metallopeptidase -
  EL022_RS13340 (NCTC11976_02781) - 3130296..3131388 (-) 1093 Protein_2657 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  EL022_RS13345 (NCTC11976_02783) nadC 3131385..3132227 (-) 843 WP_028380097.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11938.09 Da        Isoelectric Point: 11.0461

>NTDB_id=1118784 EL022_RS13330 WP_028380100.1 3128331..3128660(-) (comEA) [Legionella cherrii strain NCTC11976]
MRAKFIATALSLSVITLSAHAVIPKDSSVKKKPPIVIHKIDLNTADLSTLTGSVKGIGKKRAEAIIAYRKSHHGFKSLEE
LADVKGLGQRFMTTNRDKLNQVFVISKIQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1118784 EL022_RS13330 WP_028380100.1 3128331..3128660(-) (comEA) [Legionella cherrii strain NCTC11976]
ATGAGAGCAAAATTTATTGCTACTGCATTGTCATTATCTGTAATCACTCTTTCTGCTCATGCAGTCATCCCTAAAGACTC
TTCGGTGAAGAAAAAGCCCCCTATAGTAATTCATAAAATTGATCTTAATACCGCAGATTTATCAACGCTTACTGGTTCTG
TAAAGGGTATAGGCAAAAAACGTGCTGAAGCAATTATTGCCTATCGGAAAAGTCATCATGGATTTAAATCATTGGAAGAA
CTTGCCGATGTGAAGGGCTTGGGGCAGCGATTTATGACTACAAATCGAGATAAATTAAATCAGGTATTTGTTATTAGTAA
AATACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

57.798

100

0.578
  comEA Legionella pneumophila strain ERS1305867

57.798

100

0.578

Multiple sequence alignment