Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   JT17_RS08635 Genome accession   NZ_CP009237
Coordinates   1771722..1773935 (+) Length   737 a.a.
NCBI ID   WP_044009381.1    Uniprot ID   -
Organism   Glaesserella parasuis strain KL0318     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1766722..1778935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT17_RS08615 (JT17_08870) - 1767310..1768407 (+) 1098 WP_044008960.1 ISAs1 family transposase -
  JT17_RS08620 (JT17_08875) - 1768564..1769781 (+) 1218 WP_005711010.1 pyridoxal phosphate-dependent aminotransferase -
  JT17_RS08625 (JT17_08880) rarD 1769975..1770856 (+) 882 WP_044009379.1 EamA family transporter RarD -
  JT17_RS08630 (JT17_08885) rarD 1770856..1771722 (+) 867 WP_044009380.1 EamA family transporter RarD -
  JT17_RS08635 (JT17_08890) priA 1771722..1773935 (+) 2214 WP_044009381.1 primosomal protein N' Machinery gene
  JT17_RS08640 (JT17_08895) thiB 1773975..1774958 (-) 984 WP_021111382.1 thiamine ABC transporter substrate binding subunit -
  JT17_RS08645 (JT17_08900) - 1775197..1776264 (+) 1068 WP_010786136.1 PhoH family protein -
  JT17_RS08650 (JT17_08905) - 1776523..1777131 (-) 609 Protein_1706 IS256 family transposase -
  JT17_RS12980 - 1777158..1777289 (-) 132 WP_391489102.1 hypothetical protein -
  JT17_RS08655 (JT17_08910) - 1777302..1777508 (+) 207 WP_131266089.1 factor H binding protein domain-containing protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 83212.38 Da        Isoelectric Point: 8.5227

>NTDB_id=111876 JT17_RS08635 WP_044009381.1 1771722..1773935(+) (priA) [Glaesserella parasuis strain KL0318]
MNLIQIALPVPLARYFDYLLPTHFENVVKGARVVVPFGRQRKIGIVVDFPTTSDIPTEKLKPIEQLLDEQALFDTEMWQF
LQWASRYYHAPFGEVLQSALPVKLRQGESSERTTSDYFVVTENGRKALANGVVQKAKKQQELLSELAEFANFFEKPTACS
PAVWKALLEKGYLEKLEIPFNVQSWQEKLGEQPICNTQNRLTLNKQQTLVVSRLHYQQGFGAFLLNGVTGSGKTEVYLQV
IEEVLKRGEQVLVLVPEIGLTPQTIQRFQARFNVEIDALHSHLNDTQRLNAWLRAKNGESAIVIGTRSALFTQFQQLGLI
IIDEEHDGSFKQQDGWRYHARDLAVLRAKNNNIPIILGSATPSFESLQNVQNGKFIELQLTARAGNAHFSKQTLIDLKKQ
RIYSGLSEKLLAMMQAHLEKGNQVMLFLNRRGFAPVLLCHECGWIADCPSCDKPFTYHQKQRVLRCHHCASQKAIPRQCG
HCGSVNLITTGIGTEQLEQVLAQRFPQYSITRIDRDSTARKGSLEQHLAEIQAGKSQILIGTQMLAKGHHFPNVTLVAIV
NVDSSLFSTDYRAEERLAQLYVQVSGRAGRAEKQGEVVLQTHYPDHPLLTSLLNDGYLAFASQALAMRKIMSLPPFSSQV
LIRATGRDSDKVANFLQDLTACLQQIIGENGWQGFQLLGPFNAPMAKKAGHYRWQLLIQHSARSAIQQLLDRFDEQKEQF
LRNDIRLTVDIDPQELG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=111876 JT17_RS08635 WP_044009381.1 1771722..1773935(+) (priA) [Glaesserella parasuis strain KL0318]
ATGAACCTCATCCAAATTGCGCTACCCGTGCCGTTGGCACGTTATTTTGATTACCTGCTTCCAACGCATTTTGAAAATGT
GGTGAAAGGGGCTAGGGTCGTTGTGCCTTTTGGTCGCCAACGTAAAATCGGGATTGTGGTGGACTTTCCGACCACATCAG
ATATTCCCACCGAAAAACTGAAACCGATTGAGCAACTGTTAGATGAACAAGCTCTGTTTGACACTGAAATGTGGCAATTT
TTACAGTGGGCAAGCCGTTATTATCACGCCCCTTTCGGCGAAGTGCTACAAAGTGCCTTGCCTGTCAAATTGCGACAAGG
GGAAAGTAGCGAACGCACCACCTCAGACTATTTCGTTGTCACGGAAAACGGCAGAAAAGCACTTGCCAACGGCGTGGTTC
AAAAAGCGAAAAAACAACAAGAGCTATTAAGCGAACTGGCGGAATTTGCAAATTTCTTTGAAAAGCCGACCGCTTGTAGC
CCTGCGGTTTGGAAAGCCTTGCTTGAAAAAGGGTATCTGGAAAAGCTGGAAATCCCTTTTAACGTGCAAAGCTGGCAGGA
AAAATTAGGCGAACAGCCGATTTGCAACACTCAAAACCGTTTAACGTTGAATAAACAGCAGACCCTTGTCGTCAGCCGTT
TGCATTATCAACAAGGCTTCGGAGCGTTTTTGCTCAATGGGGTCACTGGCTCAGGGAAAACGGAAGTCTATCTGCAAGTG
ATCGAAGAAGTGCTGAAACGGGGCGAGCAAGTGTTGGTGTTAGTGCCTGAAATCGGGCTGACCCCACAAACTATTCAACG
TTTCCAAGCTCGTTTTAATGTGGAAATTGACGCATTGCATTCCCATCTCAACGACACTCAACGGCTCAATGCGTGGCTTC
GGGCAAAAAACGGCGAAAGTGCGATTGTGATCGGCACACGTTCCGCCTTGTTCACACAGTTTCAGCAACTCGGCTTAATT
ATCATTGATGAAGAACACGACGGCTCGTTCAAACAGCAAGACGGCTGGCGTTATCACGCACGAGATCTGGCAGTGCTTCG
AGCGAAAAATAACAACATTCCTATCATTCTCGGCTCGGCAACGCCTAGTTTTGAAAGTTTGCAAAATGTACAAAACGGTA
AATTTATCGAACTTCAGCTTACTGCAAGGGCTGGTAATGCACATTTTTCCAAACAAACCTTAATTGATTTGAAAAAACAG
CGGATTTATTCGGGCTTATCGGAAAAGTTGTTAGCAATGATGCAAGCTCACTTGGAAAAAGGCAATCAAGTGATGTTGTT
TTTAAACCGACGGGGGTTTGCCCCTGTTTTACTTTGCCACGAATGTGGCTGGATTGCCGATTGCCCGTCCTGTGATAAGC
CCTTTACCTATCACCAAAAACAGCGAGTATTGCGTTGCCATCACTGTGCTTCGCAAAAAGCCATTCCACGTCAGTGCGGA
CATTGTGGCTCAGTCAATTTGATTACCACAGGGATCGGCACGGAACAGCTGGAACAAGTGCTGGCACAGCGTTTTCCGCA
ATACAGCATTACTCGTATTGACCGTGACAGCACTGCCCGTAAAGGCTCGTTGGAACAACACCTTGCCGAAATCCAAGCAG
GCAAAAGCCAAATTTTGATCGGCACACAGATGTTAGCCAAAGGACACCATTTCCCGAATGTTACTTTAGTGGCAATCGTG
AATGTGGATAGTAGCCTGTTTTCCACTGATTACCGTGCAGAAGAACGTTTGGCACAGCTTTATGTACAAGTGTCAGGGCG
AGCAGGGCGGGCGGAAAAGCAAGGGGAAGTAGTGCTACAAACGCATTACCCTGATCACCCGTTACTGACTAGCTTACTCA
ACGACGGCTACCTTGCCTTTGCAAGCCAAGCCTTAGCGATGCGAAAAATAATGAGCTTACCGCCGTTTTCTTCGCAAGTG
CTTATTCGTGCAACGGGTAGAGATAGCGACAAAGTTGCAAATTTTCTGCAAGATTTGACCGCTTGTTTACAACAAATTAT
CGGTGAAAATGGCTGGCAAGGCTTTCAGCTACTCGGACCTTTCAACGCTCCGATGGCAAAAAAAGCAGGGCATTATCGCT
GGCAGTTACTTATTCAACATTCGGCAAGAAGTGCGATCCAACAGTTGTTAGATCGTTTTGATGAGCAAAAAGAACAGTTC
CTGCGAAACGATATTCGATTGACGGTGGATATTGATCCGCAGGAGTTGGGGTAG

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(635-733)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-101)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(448-473)

Helicase conserved C-terminal domain (Helicase_C)

(497-591)

DEAD/DEAH box helicase (DEAD)

(221-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

45.027

100

0.455

Multiple sequence alignment