Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ELZ63_RS00575 Genome accession   NZ_LR134171
Coordinates   115194..115847 (-) Length   217 a.a.
NCBI ID   WP_080474403.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 110194..120847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS00575 sxy/tfoX 115194..115847 (-) 654 WP_080474403.1 DNA transformation protein TfoX Regulator
  ELZ63_RS00580 (NCTC12699_00116) recA 116220..117284 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  ELZ63_RS00585 (NCTC12699_00117) recX 117363..117821 (+) 459 WP_042594010.1 recombination regulator RecX -
  ELZ63_RS00590 (NCTC12699_00118) crcB 117818..118204 (-) 387 WP_065245492.1 fluoride efflux transporter CrcB -
  ELZ63_RS00595 (NCTC12699_00119) - 118204..119022 (-) 819 WP_005694570.1 Cof-type HAD-IIB family hydrolase -
  ELZ63_RS00600 (NCTC12699_00120) - 119425..120429 (+) 1005 WP_065245491.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=1118720 ELZ63_RS00575 WP_080474403.1 115194..115847(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC12699]
MNIKDEHIESVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1118720 ELZ63_RS00575 WP_080474403.1 115194..115847(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC12699]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGTAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.618

100

0.986

Multiple sequence alignment