Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ELZ62_RS01800 Genome accession   NZ_LR134168
Coordinates   358400..358696 (+) Length   98 a.a.
NCBI ID   WP_112063261.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11394     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353400..363696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS09605 - 354976..355085 (+) 110 Protein_345 hypothetical protein -
  ELZ62_RS01790 (NCTC11394_00352) - 355043..357955 (+) 2913 WP_126507560.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  ELZ62_RS01795 (NCTC11394_00353) - 358225..358407 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  ELZ62_RS01800 (NCTC11394_00354) HI0659 358400..358696 (+) 297 WP_112063261.1 helix-turn-helix transcriptional regulator Machinery gene
  ELZ62_RS01805 (NCTC11394_00355) - 358880..360796 (+) 1917 WP_112063262.1 ABC transporter ATP-binding protein -
  ELZ62_RS01810 (NCTC11394_00356) - 360806..361342 (+) 537 WP_112063263.1 type I DNA topoisomerase -
  ELZ62_RS01815 (NCTC11394_00357) - 361358..361909 (+) 552 WP_112063264.1 Sua5/YciO/YrdC/YwlC family protein -
  ELZ62_RS01820 (NCTC11394_00358) aroE 361913..362719 (+) 807 WP_112063265.1 shikimate dehydrogenase -
  ELZ62_RS01825 (NCTC11394_00360) - 362933..363496 (+) 564 WP_048941097.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11120.01 Da        Isoelectric Point: 10.7759

>NTDB_id=1118668 ELZ62_RS01800 WP_112063261.1 358400..358696(+) (HI0659) [Haemophilus influenzae strain NCTC11394]
MNKISPLGSNWNEFEQQIFNEEEIRKSNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVRNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1118668 ELZ62_RS01800 WP_112063261.1 358400..358696(+) (HI0659) [Haemophilus influenzae strain NCTC11394]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCAAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACTCTGTCGATTGTGCCTCTAAGGGTAAGAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

97.959

100

0.98

Multiple sequence alignment