Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ELZ61_RS08295 Genome accession   NZ_LR134167
Coordinates   1740767..1742140 (-) Length   457 a.a.
NCBI ID   WP_126372862.1    Uniprot ID   -
Organism   Avibacterium volantium strain NCTC3438     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735767..1747140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS08285 (NCTC3438_01695) - 1736499..1737347 (-) 849 WP_126372858.1 autotransporter outer membrane beta-barrel domain-containing protein -
  ELZ61_RS08290 (NCTC3438_01696) - 1737375..1740686 (-) 3312 WP_126372860.1 S6 family peptidase -
  ELZ61_RS08295 (NCTC3438_01697) radA 1740767..1742140 (-) 1374 WP_126372862.1 DNA repair protein RadA Machinery gene
  ELZ61_RS08300 (NCTC3438_01698) - 1742133..1743245 (-) 1113 WP_126372864.1 CYTH domain-containing protein -
  ELZ61_RS08305 (NCTC3438_01699) - 1743404..1744084 (+) 681 WP_115249904.1 TIGR00153 family protein -
  ELZ61_RS08310 (NCTC3438_01700) - 1744124..1745386 (+) 1263 WP_126372866.1 inorganic phosphate transporter -
  ELZ61_RS08315 (NCTC3438_01701) - 1745499..1746101 (+) 603 WP_115249906.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49449.14 Da        Isoelectric Point: 8.1213

>NTDB_id=1118653 ELZ61_RS08295 WP_126372862.1 1740767..1742140(-) (radA) [Avibacterium volantium strain NCTC3438]
MAKAKTAFVCNDCGAEYARWQGQCNACKAWNTITEIRLAPAKASRADRFSGYAGETQAKIQTLAEISLQEVPRFHSGFYE
LDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQNMTALYVTGEESLQQVAMRANRLGLPTDRLNMLSETSVEQIC
HLADQLKPQIIVVDSIQVMHLADIQSSPGSVSQVRECAAFLTRYAKTRQVAIVMVGHVTKDGTLAGPKVLEHAIDCSLLL
EGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGEEDTAGSSVMVLWEGTRPLLVEIQALVDHSML
ANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPKDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFTRAIVPFANKPKSAVKNMQVFTVKKLIDALNILDNI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1118653 ELZ61_RS08295 WP_126372862.1 1740767..1742140(-) (radA) [Avibacterium volantium strain NCTC3438]
ATGGCTAAAGCAAAAACCGCCTTTGTGTGCAATGATTGCGGTGCGGAATATGCCCGCTGGCAAGGGCAGTGTAATGCCTG
TAAAGCGTGGAATACCATCACAGAAATTCGTCTAGCCCCAGCCAAGGCAAGCCGTGCTGATCGCTTCAGTGGTTATGCAG
GGGAAACGCAGGCAAAAATCCAAACCCTTGCAGAAATCAGCTTGCAAGAAGTTCCCCGTTTTCACAGTGGCTTTTATGAG
CTTGATCGTGTCTTAGGCGGAGGCATCGTACCAGGTAGTGCGATTTTGATTGGCGGACACCCTGGGGCAGGGAAAAGTAC
CTTATTATTACAAGTGATGTGTGGTTTAGCACAAAATATGACCGCACTTTACGTTACAGGCGAAGAATCCTTGCAGCAGG
TGGCAATGCGCGCCAATCGTCTTGGGTTGCCAACAGATCGGCTGAATATGTTGTCGGAAACGTCCGTAGAGCAAATTTGC
CATTTGGCCGATCAGCTTAAACCGCAAATCATCGTGGTGGATTCCATTCAAGTGATGCACCTTGCGGATATTCAGTCTTC
CCCTGGGAGCGTTTCCCAAGTGCGTGAATGTGCGGCGTTTTTAACCCGTTATGCGAAAACCCGTCAAGTGGCGATTGTGA
TGGTGGGACACGTTACCAAAGACGGCACTCTGGCAGGCCCAAAAGTGCTAGAACACGCCATTGATTGTTCATTGTTATTA
GAGGGCGAAGCGGACAGCCGTTTCCGCACATTGCGTAGCCATAAAAACCGTTTTGGCGCAGTCAATGAACTCGGCGTGTT
TGCGATGACAGAGCAAGGCTTGCGCGAGGTGAAAAATCCTTCTGCCATATTCTTAAGCCGCGGTGAAGAAGACACCGCAG
GCAGTTCCGTAATGGTGTTATGGGAAGGCACACGCCCGTTATTGGTGGAAATTCAAGCCTTGGTGGATCACTCAATGCTC
GCTAATCCAAGACGGGTGGCAGTGGGCTTGGAGCAAAATCGTCTGGCTTTATTGTTAGCCGTATTGCACCGCCACGGCGG
CTTGCAAATGTCTGATCAAGACGTGTTTGTCAATGTGGTAGGTGGCGTAAAAGTGAGTGAAACCAGTGCAGACTTGGCCT
TATTACTGGCATTGATTTCTAGCTTCCGAAATCGTCCATTACCAAAAGATCTGGTGGTGTTTGGCGAAGTGGGGCTAGCG
GGGGAAATCCGCCCCGTACCAAGCGGACAAGAACGAATTTCTGAAGCAGCCAAACACGGCTTCACCCGTGCTATCGTCCC
GTTTGCCAATAAACCGAAAAGTGCGGTCAAAAATATGCAGGTTTTTACCGTGAAAAAATTGATTGATGCGTTAAATATTT
TAGATAACATATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.035

100

0.481
  radA Streptococcus pneumoniae Rx1

44.965

93.435

0.42
  radA Streptococcus pneumoniae D39

44.965

93.435

0.42
  radA Streptococcus pneumoniae R6

44.965

93.435

0.42
  radA Streptococcus pneumoniae TIGR4

44.965

93.435

0.42
  radA Streptococcus mitis NCTC 12261

44.965

93.435

0.42
  radA Streptococcus mitis SK321

44.965

93.435

0.42

Multiple sequence alignment