Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ELZ61_RS05600 Genome accession   NZ_LR134167
Coordinates   1146788..1147744 (-) Length   318 a.a.
NCBI ID   WP_126372070.1    Uniprot ID   A0A3S5DJA4
Organism   Avibacterium volantium strain NCTC3438     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141788..1152744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS05575 (NCTC3438_01135) - 1142323..1143810 (+) 1488 WP_126372057.1 carbon starvation protein A -
  ELZ61_RS05580 (NCTC3438_01136) - 1143914..1144066 (+) 153 Protein_1067 gfo/Idh/MocA family oxidoreductase -
  ELZ61_RS05585 (NCTC3438_01137) - 1144134..1145048 (-) 915 WP_126372065.1 siderophore ABC transporter substrate-binding protein -
  ELZ61_RS05590 (NCTC3438_01138) - 1145063..1145836 (-) 774 WP_126372066.1 ATP-binding cassette domain-containing protein -
  ELZ61_RS05595 (NCTC3438_01139) - 1145827..1146795 (-) 969 WP_126372068.1 iron chelate uptake ABC transporter family permease subunit -
  ELZ61_RS05600 (NCTC3438_01140) ceuB 1146788..1147744 (-) 957 WP_126372070.1 ABC transporter permease Machinery gene
  ELZ61_RS05605 (NCTC3438_01141) - 1147941..1149080 (+) 1140 WP_126372072.1 NADH-dependent flavin oxidoreductase -
  ELZ61_RS05615 (NCTC3438_01143) secG 1149383..1149721 (-) 339 WP_126372074.1 preprotein translocase subunit SecG -
  ELZ61_RS05620 (NCTC3438_01144) - 1149855..1151783 (-) 1929 WP_126372076.1 DNA topoisomerase III -
  ELZ61_RS05625 (NCTC3438_01145) - 1151902..1152231 (+) 330 WP_103853095.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34773.87 Da        Isoelectric Point: 10.0236

>NTDB_id=1118650 ELZ61_RS05600 WP_126372070.1 1146788..1147744(-) (ceuB) [Avibacterium volantium strain NCTC3438]
MVKRRYLFILLLLLSGISLFLGVSTVNLQGLLAFDSAQWQIFLISRVPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAMLLFPSASMLLKTSVAILVSFLGTLLFMTLLSRLKFKDTIFVPLVGIMFGNIISSITAFIAYQQDL
LQNLSGWLQGDFSLVMAGRYEMLYFSVPALVLAYVFANRFSIVGMGQDFAVNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIIPNIVALYLGDNLKKVLSHTALLGAVFVLFCDILGRSLIYPYEISINAIVGVFSSAIFLYMLLKQRIQNG

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1118650 ELZ61_RS05600 WP_126372070.1 1146788..1147744(-) (ceuB) [Avibacterium volantium strain NCTC3438]
ATGGTTAAACGCCGTTATTTGTTTATCTTATTATTGTTGCTTTCGGGTATTTCGCTGTTTTTGGGTGTGAGTACGGTTAA
TTTGCAAGGTTTGCTGGCCTTTGACTCCGCCCAATGGCAGATCTTTTTAATCAGCCGTGTGCCGCGTTTGGTGAGTATTT
TAATTGCGGGGGCATCTTTGAGTATTTGTGGCTTGGTGATGCAGCAGTTGAGCCGCAATCGCTTTGTTTCGCCGACAACC
GCAGGCACGATGGATAGCGCAAGGCTTGGCATTTTGATTGCAATGTTGCTGTTTCCTTCTGCGTCAATGTTGCTCAAAAC
CAGCGTGGCGATTCTGGTTTCTTTTCTCGGTACGTTGTTGTTTATGACGCTACTCTCTCGTCTCAAATTTAAAGATACCA
TTTTCGTGCCGTTGGTGGGCATTATGTTTGGCAATATTATTAGCTCGATCACTGCTTTTATCGCCTACCAACAAGATCTG
TTGCAAAATCTCTCTGGTTGGTTGCAAGGGGATTTTTCTTTAGTGATGGCTGGGCGTTATGAAATGTTATATTTTAGCGT
GCCAGCGCTTGTTCTTGCCTATGTGTTTGCCAATCGCTTTTCCATTGTGGGAATGGGGCAAGATTTTGCCGTTAATCTCG
GTTTGAACTATCAGCAAGTGCTGTATTTAGGCTTGGCTATTGTGGCAACAGTGTCATCGATCATCATTGTTTCAGTGGGG
GTGATTCCCTTTCTCGGGCTGATTATCCCTAATATTGTTGCCCTTTATTTAGGCGATAATTTGAAAAAAGTGCTTTCTCA
CACCGCGCTACTGGGTGCTGTTTTTGTGCTTTTTTGTGATATTTTAGGGCGTTCGCTGATTTATCCTTACGAAATTTCCA
TTAACGCCATTGTGGGTGTGTTCAGCAGTGCCATTTTTCTTTATATGCTGTTAAAACAAAGGATTCAAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5DJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.581

97.484

0.513

Multiple sequence alignment