Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   EL050_RS10315 Genome accession   NZ_LR134165
Coordinates   2020739..2021215 (+) Length   158 a.a.
NCBI ID   WP_023857607.1    Uniprot ID   A0AAW6KB69
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2015739..2026215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS10285 (NCTC8721_02112) - 2016857..2017834 (+) 978 WP_020451563.1 alpha/beta hydrolase family protein -
  EL050_RS10290 (NCTC8721_02113) - 2017895..2018122 (+) 228 WP_023857612.1 hypothetical protein -
  EL050_RS10300 (NCTC8721_02114) - 2018818..2019414 (+) 597 WP_020451565.1 class I SAM-dependent methyltransferase -
  EL050_RS10305 (NCTC8721_02115) - 2019520..2020002 (+) 483 WP_020451566.1 DUF4944 domain-containing protein -
  EL050_RS10310 (NCTC8721_02116) - 2020036..2020608 (+) 573 WP_023857608.1 GNAT family N-acetyltransferase -
  EL050_RS10315 (NCTC8721_02117) rok 2020739..2021215 (+) 477 WP_023857607.1 hypothetical protein Regulator
  EL050_RS22380 (NCTC8721_02118) - 2021334..2021507 (+) 174 WP_020451569.1 hypothetical protein -
  EL050_RS10320 (NCTC8721_02119) - 2021860..2022480 (-) 621 WP_020451570.1 hypothetical protein -
  EL050_RS10325 (NCTC8721_02120) - 2023041..2023625 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  EL050_RS10330 (NCTC8721_02121) - 2023706..2024038 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  EL050_RS10335 (NCTC8721_02122) - 2024041..2024358 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  EL050_RS10340 (NCTC8721_02123) speG 2024387..2024929 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  EL050_RS10345 (NCTC8721_02124) - 2024966..2025322 (-) 357 WP_023857605.1 YxeA family protein -
  EL050_RS10350 (NCTC8721_02125) - 2025502..2025942 (+) 441 WP_023857604.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18322.18 Da        Isoelectric Point: 9.8473

>NTDB_id=1118595 EL050_RS10315 WP_023857607.1 2020739..2021215(+) (rok) [Bacillus paralicheniformis strain NCTC8721]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDQESDPAINKKSSLIDLASAAAEELKQSQIAVDKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILHKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1118595 EL050_RS10315 WP_023857607.1 2020739..2021215(+) (rok) [Bacillus paralicheniformis strain NCTC8721]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
GAAAGAACGACAAGACATTTATTCGAAGCTGCGTGAATTGGATCAGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAGATTGCCGTTGACAAACATCCACCCATCAAAACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAACCTGCCCGCGGCCATTATATTTTGCATAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.494

Multiple sequence alignment