Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EL050_RS08440 Genome accession   NZ_LR134165
Coordinates   1654662..1654949 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649662..1659949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS08420 (NCTC8721_01734) - 1651323..1651697 (+) 375 WP_020451232.1 nuclear transport factor 2 family protein -
  EL050_RS08425 (NCTC8721_01735) - 1651822..1653054 (-) 1233 WP_020451233.1 aminopeptidase -
  EL050_RS08430 (NCTC8721_01736) - 1653144..1653275 (-) 132 WP_003181378.1 protein YkpC -
  EL050_RS08435 (NCTC8721_01737) mreBH 1653349..1654356 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  EL050_RS08440 (NCTC8721_01738) abrB 1654662..1654949 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EL050_RS08445 (NCTC8721_01739) - 1655117..1656454 (+) 1338 WP_020451236.1 ATP-binding protein -
  EL050_RS08450 (NCTC8721_01740) - 1656518..1657179 (+) 662 Protein_1619 TrkA family potassium uptake protein -
  EL050_RS08455 (NCTC8721_01741) ade 1657307..1659028 (+) 1722 WP_020451238.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=1118590 EL050_RS08440 WP_020451235.1 1654662..1654949(+) (abrB) [Bacillus paralicheniformis strain NCTC8721]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1118590 EL050_RS08440 WP_020451235.1 1654662..1654949(+) (abrB) [Bacillus paralicheniformis strain NCTC8721]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTAATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment