Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EL050_RS06205 Genome accession   NZ_LR134165
Coordinates   1220416..1220994 (+) Length   192 a.a.
NCBI ID   WP_020450829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215416..1225994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS06185 (NCTC8721_01264) - 1215914..1217206 (-) 1293 WP_025811745.1 globin-coupled sensor protein -
  EL050_RS06190 (NCTC8721_01265) - 1217313..1218842 (-) 1530 WP_023856580.1 FAD-dependent oxidoreductase -
  EL050_RS06195 (NCTC8721_01266) - 1218984..1219841 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  EL050_RS06200 (NCTC8721_01267) - 1219910..1220143 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  EL050_RS06205 (NCTC8721_01268) comK 1220416..1220994 (+) 579 WP_020450829.1 competence protein ComK Regulator
  EL050_RS06210 (NCTC8721_01269) - 1220988..1221353 (-) 366 WP_020450830.1 hypothetical protein -
  EL050_RS06215 (NCTC8721_01270) - 1221561..1222172 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  EL050_RS06220 (NCTC8721_01271) lepB 1222185..1222703 (+) 519 WP_020450832.1 signal peptidase I -
  EL050_RS06225 (NCTC8721_01273) - 1222832..1224607 (-) 1776 WP_025811741.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.61 Da        Isoelectric Point: 8.2478

>NTDB_id=1118577 EL050_RS06205 WP_020450829.1 1220416..1220994(+) (comK) [Bacillus paralicheniformis strain NCTC8721]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1118577 EL050_RS06205 WP_020450829.1 1220416..1220994(+) (comK) [Bacillus paralicheniformis strain NCTC8721]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment