Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ELZ55_RS10650 Genome accession   NZ_LR134139
Coordinates   2046857..2047573 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain NCTC4163     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2041857..2052573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ55_RS10620 (NCTC4163_01992) - 2042077..2042703 (+) 627 WP_000522384.1 nitroreductase family protein -
  ELZ55_RS10625 (NCTC4163_01993) - 2043064..2043849 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  ELZ55_RS14605 hld 2044445..2044525 (-) 81 WP_000046022.1 delta-hemolysin -
  ELZ55_RS10635 (NCTC4163_01995) agrB 2044815..2045384 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  ELZ55_RS10640 (NCTC4163_01996) agrD 2045381..2045521 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  ELZ55_RS10645 (NCTC4163_01997) agrC 2045546..2046838 (+) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  ELZ55_RS10650 (NCTC4163_01998) agrA 2046857..2047573 (+) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  ELZ55_RS10655 - 2047645..2047754 (+) 110 Protein_1974 hypothetical protein -
  ELZ55_RS10660 (NCTC4163_01999) - 2047942..2048901 (-) 960 WP_001253302.1 carbohydrate kinase family protein -
  ELZ55_RS10665 (NCTC4163_02000) - 2048898..2050382 (-) 1485 WP_042727666.1 sucrose-6-phosphate hydrolase -
  ELZ55_RS10670 (NCTC4163_02001) - 2050531..2051481 (-) 951 WP_000790324.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=1118456 ELZ55_RS10650 WP_000688498.1 2046857..2047573(+) (agrA) [Staphylococcus aureus strain NCTC4163]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1118456 ELZ55_RS10650 WP_000688498.1 2046857..2047573(+) (agrA) [Staphylococcus aureus strain NCTC4163]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment