Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JT17_RS03160 Genome accession   NZ_CP009237
Coordinates   647931..648440 (+) Length   169 a.a.
NCBI ID   WP_021118024.1    Uniprot ID   -
Organism   Glaesserella parasuis strain KL0318     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 642931..653440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT17_RS03145 (JT17_03290) - 644772..645116 (+) 345 WP_005711402.1 DUF5339 domain-containing protein -
  JT17_RS03150 (JT17_03295) - 645508..645771 (-) 264 WP_012621534.1 GrxA family glutaredoxin -
  JT17_RS03155 (JT17_03300) typA 645820..647667 (-) 1848 WP_021114654.1 translational GTPase TypA -
  JT17_RS03160 (JT17_03305) luxS 647931..648440 (+) 510 WP_021118024.1 S-ribosylhomocysteine lyase Regulator
  JT17_RS03165 (JT17_03310) - 648557..650407 (+) 1851 WP_044009085.1 ABC transporter ATP-binding protein -
  JT17_RS03170 (JT17_03315) iscX 650492..650686 (-) 195 WP_010785893.1 Fe-S cluster assembly protein IscX -
  JT17_RS03175 (JT17_03320) fdx 650686..651027 (-) 342 WP_010785894.1 ISC system 2Fe-2S type ferredoxin -
  JT17_RS03180 (JT17_03325) hscA 651122..652978 (-) 1857 WP_044009086.1 Fe-S protein assembly chaperone HscA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18992.72 Da        Isoelectric Point: 5.2854

>NTDB_id=111845 JT17_RS03160 WP_021118024.1 647931..648440(+) (luxS) [Glaesserella parasuis strain KL0318]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDESKIPELNEYQCGSYKEHSLADAHEIARNVLKQPIGINRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=111845 JT17_RS03160 WP_021118024.1 647931..648440(+) (luxS) [Glaesserella parasuis strain KL0318]
ATGCCTTTACTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCTCCTGCGGTGCGTGTTGCAAAAACAATGACAAC
CCCGAAGGGAGATACGATTACTGTGTTTGATTTGCGTTTTGTCCGTCCAAACATTGAGATTTTATCACCTCGTGGTATTC
ATACGATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCGGCTGAAGAAGTGGCAAAAGCGTGGGAAGCCTC
TATGCGTGATGCGTTAGAAAAAGTGCCTGATGAGTCTAAAATTCCTGAATTAAACGAATATCAATGTGGCTCTTATAAAG
AACACTCTTTAGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACGAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.833

99.408

0.704

Multiple sequence alignment