Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BLEG1_RS06720 Genome accession   NZ_CP003923
Coordinates   1372003..1374261 (+) Length   752 a.a.
NCBI ID   WP_038478735.1    Uniprot ID   -
Organism   Shouchella lehensis G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367003..1379261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLEG1_RS06695 (BleG1_1397) - 1367147..1368409 (-) 1263 WP_038478723.1 replication-associated recombination protein A -
  BLEG1_RS06700 (BleG1_1398) cymR 1368594..1369013 (+) 420 WP_035396059.1 cysteine metabolism transcriptional regulator CymR -
  BLEG1_RS06705 (BleG1_1399) - 1369026..1370183 (+) 1158 WP_038478726.1 cysteine desulfurase family protein -
  BLEG1_RS06710 (BleG1_1400) mnmA 1370207..1371298 (+) 1092 WP_038478729.1 tRNA 2-thiouridine(34) synthase MnmA -
  BLEG1_RS06715 (BleG1_1401) - 1371333..1371992 (+) 660 WP_038478732.1 tetratricopeptide repeat protein -
  BLEG1_RS06720 (BleG1_1402) recD2 1372003..1374261 (+) 2259 WP_038478735.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BLEG1_RS06725 (BleG1_1403) - 1374344..1374808 (+) 465 WP_374188389.1 hypothetical protein -
  BLEG1_RS06730 (BleG1_1404) - 1374823..1375011 (+) 189 WP_176463610.1 hypothetical protein -
  BLEG1_RS06735 (BleG1_1405) - 1375032..1375220 (+) 189 WP_038478741.1 hypothetical protein -
  BLEG1_RS06740 (BleG1_1406) - 1375317..1376393 (+) 1077 WP_051667455.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84654.94 Da        Isoelectric Point: 6.1949

>NTDB_id=111844 BLEG1_RS06720 WP_038478735.1 1372003..1374261(+) (recD2) [Shouchella lehensis G1]
MDVEETGRYIKGKVTHVLFRNAENDYTVATVKIDKTNEQIEAKKTTIVGHLPELEMDETYSFFGQVTEHPKFGTQYKVET
FKREMPKTKNGIIKFLSSDRFPGIGTKTAETIVNELGERAISLIIEDQHVLDRVPKLKKENAMMLHQRLLEHQGAEQVII
QLSQYGFGTELSMNVYRAYKLQALDIIRTNPYLLIKDVEGVGFRRADQLGAAIGLTGDHPERVRAGILYLINELSIQDGH
LFLNTESFIQEVVLLLHTPNKPVSNENVQQIIKEMNEEGLVVTEHDRIYMKSLFYAERGIAQNIMRIKSYELQSEFTQAD
MEKTLGELEENYNVTYSHFQKEAIETALHSPIMLLTGGPGTGKTTVIKGIVESYARLQGVNLDGRGTSEKENRSLPIKLA
APTGRAAKRMAEATELSAGTIHSLLGWKGSATGFDKGDHDQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVVLVGDEN
QLPSVGPGQVLKDLLDSEVIPTVQLNEIYRQAEGSSIIELAHSMKDGYLPTDITAKKPDLRFFSCQTNQVKQAVWQICEN
ARTKGYSPREIQVLAPIYRGGAGIIELNTMLQTLFNPAKEGRREIPFGDVIFRKGDMVLQLVNNAEENVFNGDRGEIVAI
LYAKETTEKKDQLVVSFDGLEVTYDKKDFTQLTHAYCSSIHKAQGSEFPIVVMPVVGNYQRMLRRNLLYTGITRAKQFLL
LCGDIKTFEQAIQKKNDGRQSLLKDRLQERMM

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=111844 BLEG1_RS06720 WP_038478735.1 1372003..1374261(+) (recD2) [Shouchella lehensis G1]
ATGGATGTGGAAGAAACAGGAAGATACATTAAAGGAAAAGTGACACACGTGCTATTCCGTAATGCTGAAAATGATTATAC
GGTTGCTACTGTTAAAATTGATAAAACGAATGAACAAATTGAAGCGAAGAAAACAACAATAGTCGGTCACCTTCCAGAGC
TTGAGATGGACGAAACGTATTCGTTTTTTGGACAGGTTACCGAACACCCAAAGTTTGGTACACAATATAAAGTTGAGACA
TTTAAAAGGGAAATGCCTAAAACGAAAAATGGTATTATTAAATTTCTTTCAAGTGATCGTTTTCCTGGTATTGGAACGAA
AACAGCCGAAACGATTGTTAATGAACTAGGTGAACGCGCAATTTCGCTTATTATTGAAGATCAGCATGTTCTTGATCGAG
TGCCAAAGTTGAAAAAAGAGAATGCTATGATGCTTCATCAACGTTTATTAGAACATCAAGGAGCCGAACAAGTTATTATT
CAGTTATCTCAATATGGCTTTGGGACAGAGCTATCAATGAATGTGTATCGGGCGTATAAACTTCAAGCACTTGATATTAT
TCGTACTAATCCATATTTATTAATAAAAGACGTAGAAGGAGTTGGTTTTCGCCGCGCCGATCAGCTTGGGGCAGCCATTG
GCTTAACTGGGGATCATCCGGAACGCGTGCGTGCGGGTATCTTATACTTAATTAATGAATTAAGTATCCAAGATGGGCAT
CTTTTTCTTAATACGGAGTCGTTTATTCAAGAGGTTGTGCTATTGCTACATACACCAAATAAGCCTGTAAGTAATGAAAA
TGTTCAACAAATCATTAAAGAAATGAATGAAGAAGGTCTGGTTGTAACAGAGCATGACCGTATTTATATGAAATCTCTTT
TTTATGCGGAGCGAGGAATCGCTCAAAACATTATGCGTATAAAGTCTTATGAACTTCAATCTGAATTTACGCAAGCAGAT
ATGGAAAAAACCCTCGGTGAGTTAGAAGAGAACTACAATGTAACGTATTCGCATTTCCAAAAAGAAGCAATAGAAACAGC
GCTTCATTCGCCTATTATGCTTTTGACTGGAGGTCCGGGTACAGGCAAAACAACCGTTATAAAGGGAATTGTAGAATCTT
ATGCTCGTTTACAAGGCGTCAATCTTGATGGTCGAGGAACGAGCGAAAAAGAAAACCGGTCTTTGCCAATTAAGCTTGCT
GCACCTACAGGACGTGCAGCGAAACGAATGGCTGAAGCCACCGAACTGTCTGCTGGTACAATTCATAGCTTGCTTGGCTG
GAAAGGCAGCGCCACAGGTTTTGATAAAGGAGATCATGATCAGCTCGAAGGAGAACTGTTAATTGTAGATGAAATGTCGA
TGGTGGATGCTTGGGTCGCTAATCAGTTGTTCAAAGCGATTCCGAAAGGAATGCAAGTCGTTCTTGTTGGTGATGAAAAT
CAATTGCCATCGGTTGGACCTGGGCAGGTGCTTAAAGATTTGCTCGACTCGGAAGTGATACCTACCGTTCAATTAAATGA
AATTTATCGACAGGCAGAAGGTTCATCCATTATTGAGTTAGCTCATTCCATGAAAGATGGTTATTTGCCAACAGATATAA
CGGCAAAAAAACCTGATTTACGCTTTTTCTCTTGTCAAACCAATCAAGTGAAGCAAGCGGTCTGGCAAATATGTGAAAAT
GCACGTACAAAAGGCTATAGTCCGAGGGAAATTCAAGTATTAGCTCCGATTTATCGTGGTGGAGCAGGCATTATTGAATT
AAATACTATGTTGCAAACACTCTTCAATCCGGCTAAAGAAGGGCGGCGTGAAATTCCTTTCGGTGATGTTATTTTTCGTA
AAGGTGACATGGTACTTCAACTTGTGAACAATGCAGAAGAAAATGTCTTTAATGGAGATAGAGGAGAAATTGTAGCTATC
CTTTATGCCAAAGAGACAACGGAGAAAAAAGATCAACTCGTTGTGTCGTTTGATGGCTTAGAAGTAACGTACGACAAAAA
AGATTTTACTCAGCTAACCCATGCCTACTGTTCCTCTATTCATAAAGCCCAAGGTAGTGAATTTCCTATTGTAGTCATGC
CAGTTGTTGGAAATTATCAACGCATGCTACGACGGAATTTATTATATACAGGCATAACAAGGGCAAAGCAATTTTTACTT
TTATGCGGAGACATAAAAACATTTGAACAAGCAATTCAAAAAAAGAATGACGGCAGACAATCATTATTAAAAGACCGACT
TCAAGAGCGAATGATGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-657)

AAA domain (AAA_30)

(336-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.899

99.069

0.544

Multiple sequence alignment