Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   BLEG1_RS06630 Genome accession   NZ_CP003923
Coordinates   1351203..1353557 (+) Length   784 a.a.
NCBI ID   WP_038478688.1    Uniprot ID   A0A060LRT4
Organism   Shouchella lehensis G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1346203..1358557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLEG1_RS06605 (BleG1_1377) - 1346253..1346477 (+) 225 WP_371836664.1 hypothetical protein -
  BLEG1_RS06610 (BleG1_1378) spoVB 1346539..1348080 (-) 1542 WP_038478679.1 stage V sporulation protein B -
  BLEG1_RS06615 (BleG1_1379) - 1348253..1348555 (+) 303 WP_038478682.1 post-transcriptional regulator -
  BLEG1_RS20415 (BleG1_1380) secD 1348573..1349877 (+) 1305 WP_078440186.1 protein translocase subunit SecD -
  BLEG1_RS20420 (BleG1_1381) secF 1349867..1350808 (+) 942 WP_084167407.1 protein translocase subunit SecF -
  BLEG1_RS06625 (BleG1_1382) - 1350830..1351138 (+) 309 WP_038478685.1 lipopolysaccharide assembly LapA domain-containing protein -
  BLEG1_RS06630 (BleG1_1383) recJ 1351203..1353557 (+) 2355 WP_038478688.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BLEG1_RS06635 (BleG1_1384) - 1353547..1354062 (+) 516 WP_038478690.1 adenine phosphoribosyltransferase -
  BLEG1_RS06640 (BleG1_1385) - 1354189..1356381 (+) 2193 WP_038478693.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BLEG1_RS06645 (BleG1_1386) dtd 1356404..1356853 (+) 450 WP_038478696.1 D-aminoacyl-tRNA deacylase -
  BLEG1_RS06650 (BleG1_1387) - 1357003..1358016 (+) 1014 WP_038478699.1 LacI family DNA-binding transcriptional regulator -

Sequence


Protein


Download         Length: 784 a.a.        Molecular weight: 87154.08 Da        Isoelectric Point: 4.6496

>NTDB_id=111843 BLEG1_RS06630 WP_038478688.1 1351203..1353557(+) (recJ) [Shouchella lehensis G1]
MLQPNARWRILEQETTKVTNLVNELNLSQVAARLLVNRGFTDPETASEFLMKDEPAFLDPFLLKGMAEAVDRIQSAVEKN
EQILVFGDYDADGVSSTAVLVTALKMIGADCDYYIPNRFTEGYGPNNPALQWAKDEGYSLVITVDTGISAVTQADYAKEI
GLDFIVTDHHEPPPTLPNSYTTINPKQPGCSYPFKELAGVGVAFKVAHGLLGRVPNELLDYAVIGTIADLVPLVGENRLL
AKKGLRAFQTSDKIGIQALKDVCGMTAGEVEADHIGFAIGPRLNAAGRLDSAIPAVELLLAENREEANELASEIDRLNKE
RQKVVNDISKDAIAVVQEMDGIPEALVVAKEGWNAGVIGIVASRLVEKFYRPTIVLTIDPETGLAKGSARSIEGFDMFAE
LSKSRDILPHFGGHPMAAGMTLQSEHVGMLRERLIEQAKNGLAPEAFTPITTIDLTVAVDDVTIEVLKEIEELSPFGVEN
AKPRVLIDDVKLADIKQIGSDSSHLKFQFAGEAKTLDGIAFRKGDLFEHITPQASVSAVGTLSINEWNGRIKPQLIVDDL
AVKQWQLFDWRSLQLNRVGTRLVDLPSEKSIVIAFQEKTFEACQERGIVVYRSSDPLPSFANNYIILLDVPSHREELYRL
FEEGSPPSRIYVVFSEEEESFFKTNPNRDQFKWYYAFLKKRQSFKVADLKKLEAYKGWSSETTSFMNEVFNDLGFIQMDD
QYLTIVEAPAKKDLSDSKTYQAKQEQTWLENELVYASYGQLRELFSERIGSKDSQKKETITHGL

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=111843 BLEG1_RS06630 WP_038478688.1 1351203..1353557(+) (recJ) [Shouchella lehensis G1]
ATGTTGCAACCAAACGCAAGGTGGCGCATTTTAGAGCAAGAAACAACGAAAGTAACGAACTTAGTAAATGAATTAAATCT
CTCCCAAGTCGCCGCGAGGCTATTGGTTAATAGAGGCTTTACTGATCCTGAAACGGCAAGTGAATTTCTAATGAAAGATG
AACCAGCGTTTCTTGATCCATTTCTATTAAAGGGAATGGCGGAAGCTGTTGATCGAATCCAATCTGCCGTTGAGAAAAAT
GAACAAATTCTAGTATTTGGAGATTATGATGCGGATGGTGTAAGTTCAACTGCTGTTCTCGTTACCGCTTTAAAAATGAT
TGGAGCGGATTGTGACTATTATATTCCAAACCGCTTTACTGAAGGATACGGACCGAATAATCCAGCCCTTCAGTGGGCAA
AAGATGAAGGCTACTCTCTTGTCATTACAGTGGATACAGGAATTTCTGCTGTAACACAAGCCGATTATGCCAAAGAAATT
GGATTAGATTTTATTGTTACTGATCATCACGAGCCACCGCCAACACTTCCAAATAGTTATACAACGATTAATCCGAAACA
ACCTGGCTGCTCGTATCCTTTTAAGGAATTAGCAGGTGTGGGTGTCGCATTTAAAGTGGCGCATGGACTATTAGGGCGTG
TTCCAAACGAGTTGCTTGACTATGCCGTTATTGGAACGATTGCCGACCTTGTACCTTTGGTCGGAGAAAATCGTTTGCTT
GCGAAAAAGGGCCTTCGTGCATTTCAAACTTCAGATAAAATAGGCATTCAAGCGTTAAAAGATGTATGTGGAATGACTGC
TGGAGAAGTGGAAGCCGATCATATTGGCTTTGCGATTGGACCAAGGTTAAATGCCGCTGGTCGATTGGATTCAGCCATTC
CAGCAGTTGAACTGCTACTTGCTGAAAATCGAGAAGAAGCGAATGAGTTAGCCTCGGAAATTGATCGTTTAAATAAAGAA
CGCCAAAAAGTTGTTAACGATATATCGAAAGATGCAATAGCTGTTGTTCAGGAAATGGACGGAATTCCAGAAGCACTTGT
TGTGGCAAAAGAAGGTTGGAATGCAGGTGTTATCGGAATTGTGGCATCTCGATTAGTGGAGAAATTTTACCGCCCAACTA
TTGTACTAACGATTGACCCAGAAACAGGTTTAGCTAAAGGATCTGCTCGAAGCATTGAAGGGTTTGATATGTTTGCAGAA
CTATCGAAAAGTCGAGACATTCTTCCTCACTTTGGTGGGCATCCAATGGCGGCAGGCATGACGTTACAAAGCGAACACGT
TGGTATGTTGCGTGAACGACTGATTGAGCAAGCGAAGAACGGCCTTGCGCCAGAAGCGTTTACGCCAATAACGACAATTG
ATTTAACGGTAGCAGTTGATGATGTCACCATTGAGGTGTTAAAAGAAATAGAAGAGTTATCTCCGTTCGGTGTAGAGAAT
GCAAAGCCAAGAGTATTAATTGATGATGTAAAGCTTGCTGATATAAAACAAATTGGCAGTGATTCAAGTCATTTGAAATT
TCAGTTTGCTGGTGAAGCGAAGACGCTGGATGGGATCGCGTTTCGTAAAGGTGATTTATTTGAACATATTACGCCGCAAG
CAAGTGTGTCTGCAGTTGGGACGCTCTCCATTAATGAGTGGAACGGTCGGATCAAGCCGCAGTTAATAGTAGATGATCTT
GCTGTAAAGCAATGGCAGCTATTTGATTGGCGGAGTTTACAATTGAATCGAGTAGGCACACGTTTAGTAGATCTACCTTC
TGAGAAGTCCATTGTCATTGCTTTTCAGGAAAAAACCTTTGAAGCATGTCAAGAACGTGGCATTGTCGTCTATCGCTCAA
GTGATCCACTGCCGTCTTTTGCGAATAACTATATTATCCTACTAGATGTTCCATCACATCGGGAAGAACTTTATCGTTTA
TTTGAAGAGGGGAGTCCACCTAGTCGAATCTATGTTGTTTTTTCCGAAGAAGAAGAATCGTTTTTTAAAACGAATCCAAA
TCGGGACCAGTTTAAATGGTATTACGCATTTTTAAAGAAACGACAGTCATTTAAGGTAGCTGACCTTAAAAAGCTGGAAG
CATATAAAGGATGGTCCTCTGAAACCACTTCATTTATGAACGAAGTATTTAATGATCTAGGTTTTATTCAAATGGATGAT
CAGTATTTGACTATCGTCGAGGCACCAGCCAAAAAAGATTTAAGTGATTCAAAAACGTATCAAGCGAAACAAGAACAAAC
ATGGCTTGAAAATGAACTCGTTTATGCTTCTTATGGGCAACTTAGAGAGTTATTTTCAGAACGAATTGGAAGCAAGGATT
CACAGAAGAAGGAGACGATCACACATGGATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A060LRT4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.873

100

0.503


Multiple sequence alignment