Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ELZ51_RS10115 Genome accession   NZ_LR134094
Coordinates   1998537..1999898 (-) Length   453 a.a.
NCBI ID   WP_126427389.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993537..2004898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS10095 (NCTC4669_02131) - 1995054..1996322 (-) 1269 WP_126427381.1 MFS transporter -
  ELZ51_RS10100 (NCTC4669_02132) - 1996417..1997118 (-) 702 WP_126427383.1 hypothetical protein -
  ELZ51_RS10105 (NCTC4669_02133) - 1997122..1997568 (-) 447 WP_126427385.1 LytTR family DNA-binding domain-containing protein -
  ELZ51_RS10110 (NCTC4669_02134) - 1997854..1998348 (-) 495 WP_126427387.1 beta-class carbonic anhydrase -
  ELZ51_RS10115 (NCTC4669_02135) radA 1998537..1999898 (-) 1362 WP_126427389.1 DNA repair protein RadA Machinery gene
  ELZ51_RS10120 (NCTC4669_02136) - 1999981..2000427 (-) 447 WP_003052913.1 dUTP diphosphatase -
  ELZ51_RS10125 (NCTC4669_02137) - 2000536..2001303 (-) 768 WP_126427391.1 epoxyqueuosine reductase QueH -
  ELZ51_RS10130 (NCTC4669_02138) - 2001422..2003206 (-) 1785 WP_003052917.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49454.75 Da        Isoelectric Point: 5.8179

>NTDB_id=1118301 ELZ51_RS10115 WP_126427389.1 1998537..1999898(-) (radA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEIKEIKNARVSLTGEKSKPVKLKDVDNINYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEVGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNDIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1118301 ELZ51_RS10115 WP_126427389.1 1998537..1999898(-) (radA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGATATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGATCAAAGAGATTAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAACTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTCGGTGGTGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGCGATCCAGGTATTGGGAAGTCCACCTTACTCCTGCA
AGTATCCACGCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGAGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATCATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
TAGCCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTGGGACATG
TTACCAAGGAAGGAACCTTGGCTGGTCCCCGTATGTTAGAACACATGGTGGATACCGTTCTCTATTTTGAAGGAGAAAGG
CATCACACCTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGTATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAATCCAAGTCAGGTCTTTCTTGAAGAGCGATTAGATGGTGCTACAGGATCCGCCATTG
TGGTGACCATGGAAGGCAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTCACCCCAACCGTTTTTGGCAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGTGTGAGCCTAATCATGGCAGTTTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCTTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTGGCCA
TCGCATCTAGTTATAAGGAAAAACCAACCAACCCTCAAGAAGCTTTCTTAGGAGAGGTTGGATTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGATATTGAAGTGGTGGGTGTAACAACAGTCGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.283

99.779

0.861
  radA Streptococcus pneumoniae R6

86.283

99.779

0.861
  radA Streptococcus pneumoniae TIGR4

86.283

99.779

0.861
  radA Streptococcus mitis SK321

86.283

99.779

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment