Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NJ8700_RS08870 Genome accession   NZ_CP009230
Coordinates   1900026..1900532 (+) Length   168 a.a.
NCBI ID   WP_005701936.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895026..1905532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS08830 (NJ8700_09020) rep 1895088..1897103 (+) 2016 WP_005701941.1 DNA helicase Rep -
  NJ8700_RS08850 (NJ8700_09040) - 1897618..1897998 (-) 381 WP_005701940.1 PRD domain-containing protein -
  NJ8700_RS08855 (NJ8700_09045) - 1898128..1898736 (+) 609 WP_005701939.1 beta-phosphoglucomutase family hydrolase -
  NJ8700_RS08860 (NJ8700_09050) - 1898730..1899344 (+) 615 WP_005701938.1 sugar O-acetyltransferase -
  NJ8700_RS08865 (NJ8700_09055) - 1899337..1899825 (+) 489 WP_005701937.1 VTT domain-containing protein -
  NJ8700_RS08870 (NJ8700_09060) luxS 1900026..1900532 (+) 507 WP_005701936.1 S-ribosylhomocysteine lyase Regulator
  NJ8700_RS08875 (NJ8700_09065) purT 1900550..1901731 (+) 1182 WP_012771866.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NJ8700_RS08880 (NJ8700_09070) - 1902021..1902257 (+) 237 WP_012771867.1 hypothetical protein -
  NJ8700_RS08885 (NJ8700_09075) - 1902564..1902965 (-) 402 WP_005703478.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  NJ8700_RS08890 (NJ8700_09080) - 1903158..1904525 (-) 1368 WP_044055272.1 patatin-like phospholipase family protein -
  NJ8700_RS08895 (NJ8700_09085) deoC 1904759..1905430 (+) 672 WP_012771869.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18893.53 Da        Isoelectric Point: 5.8031

>NTDB_id=111823 NJ8700_RS08870 WP_005701936.1 1900026..1900532(+) (luxS) [Aggregatibacter aphrophilus NJ8700]
MPLLDSFKVDHTRMKAPAVRVAKTMSTPRGDTITVFDLRFTIPNKENLPPKGIHTLEHLFAGFMRDHLNDDHVEIIDISP
MGCRTGFYMSLIGTPNEQQVAKAWLASMQDILNVKEQSQIPELNEYQCGTYTEHSLAEAHQIAQNVLARGVGVNKNEELT
LDEALLNH

Nucleotide


Download         Length: 507 bp        

>NTDB_id=111823 NJ8700_RS08870 WP_005701936.1 1900026..1900532(+) (luxS) [Aggregatibacter aphrophilus NJ8700]
ATGCCATTACTTGATAGTTTTAAAGTGGATCATACTCGTATGAAAGCTCCAGCAGTAAGAGTTGCTAAAACTATGAGTAC
GCCAAGGGGCGACACTATAACAGTTTTCGATTTACGTTTCACTATTCCGAATAAAGAAAATTTGCCACCAAAAGGCATTC
ATACCTTAGAACATCTTTTTGCCGGTTTTATGCGCGATCATTTAAATGATGATCATGTAGAAATCATCGACATTTCCCCA
ATGGGCTGTCGTACCGGTTTTTATATGTCCTTAATCGGCACGCCAAATGAACAACAAGTGGCAAAGGCGTGGCTCGCTTC
CATGCAGGATATTTTAAATGTTAAAGAACAAAGCCAAATTCCTGAATTAAATGAGTATCAATGCGGTACTTACACCGAAC
ATTCCTTGGCTGAAGCTCATCAAATCGCCCAAAATGTGTTAGCTCGTGGTGTTGGTGTCAATAAAAACGAAGAGTTGACC
TTAGATGAAGCCTTGTTAAATCACTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

75.449

99.405

0.75

Multiple sequence alignment