Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ELZ48_RS04320 Genome accession   NZ_LR134089
Coordinates   905194..905910 (-) Length   238 a.a.
NCBI ID   WP_002482781.1    Uniprot ID   A0A380HJP0
Organism   Staphylococcus saprophyticus strain NCTC7666     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 900194..910910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ48_RS04300 (NCTC7666_00897) - 901259..901483 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  ELZ48_RS04305 (NCTC7666_00898) - 901629..902582 (+) 954 WP_002482778.1 LacI family DNA-binding transcriptional regulator -
  ELZ48_RS04310 (NCTC7666_00899) - 902668..904152 (+) 1485 WP_041079874.1 sucrose-6-phosphate hydrolase -
  ELZ48_RS04315 (NCTC7666_00900) - 904149..905117 (+) 969 WP_002482780.1 carbohydrate kinase family protein -
  ELZ48_RS04320 (NCTC7666_00901) agrA 905194..905910 (-) 717 WP_002482781.1 quorum-sensing response regulator AgrA Regulator
  ELZ48_RS04325 (NCTC7666_00902) agrC 905923..907218 (-) 1296 WP_041079873.1 quorum-sensing sensor histidine kinase AgrC -
  ELZ48_RS04330 (NCTC7666_00903) agrD 907244..907405 (-) 162 WP_002482783.1 cyclic lactone autoinducer peptide AgrD -
  ELZ48_RS04335 (NCTC7666_00904) - 907408..907977 (-) 570 WP_126424452.1 accessory gene regulator AgrB -
  ELZ48_RS04340 (NCTC7666_00906) - 908737..909522 (-) 786 WP_115338435.1 carbon-nitrogen family hydrolase -
  ELZ48_RS04345 (NCTC7666_00907) - 909693..910322 (-) 630 WP_115338436.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27954.74 Da        Isoelectric Point: 5.0875

>NTDB_id=1118075 ELZ48_RS04320 WP_002482781.1 905194..905910(-) (agrA) [Staphylococcus saprophyticus strain NCTC7666]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1118075 ELZ48_RS04320 WP_002482781.1 905194..905910(-) (agrA) [Staphylococcus saprophyticus strain NCTC7666]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857

Multiple sequence alignment