Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ELZ50_RS08145 Genome accession   NZ_LR134087
Coordinates   1622216..1622662 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617216..1627662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ50_RS08115 (NCTC7121_01532) gcvPA 1618142..1619488 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ELZ50_RS08120 (NCTC7121_01533) gcvT 1619508..1620599 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ELZ50_RS08125 - 1620758..1621282 (-) 525 WP_001015121.1 shikimate kinase -
  ELZ50_RS08130 - 1621272..1621418 (-) 147 WP_001789879.1 hypothetical protein -
  ELZ50_RS08135 (NCTC7121_01535) comGF 1621515..1622012 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  ELZ50_RS08140 (NCTC7121_01536) comGE 1621930..1622229 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ELZ50_RS08145 (NCTC7121_01537) comGD 1622216..1622662 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  ELZ50_RS08150 (NCTC7121_01538) comGC 1622640..1622951 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ELZ50_RS08155 (NCTC7121_01539) comGB 1622965..1624035 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  ELZ50_RS08160 (NCTC7121_01540) comGA 1624007..1624981 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ELZ50_RS08165 (NCTC7121_01541) - 1625033..1625656 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ELZ50_RS08170 (NCTC7121_01542) - 1625653..1625982 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ELZ50_RS08175 (NCTC7121_01543) - 1625982..1626968 (-) 987 WP_000161314.1 ROK family glucokinase -
  ELZ50_RS08180 - 1626965..1627168 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=1118045 ELZ50_RS08145 WP_072433556.1 1622216..1622662(-) (comGD) [Staphylococcus aureus strain NCTC7121]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1118045 ELZ50_RS08145 WP_072433556.1 1622216..1622662(-) (comGD) [Staphylococcus aureus strain NCTC7121]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGCAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment