Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NJ8700_RS06200 Genome accession   NZ_CP009230
Coordinates   1364775..1365389 (-) Length   204 a.a.
NCBI ID   WP_005701145.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359775..1370389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS06175 (NJ8700_06325) ybgE 1359802..1360089 (-) 288 WP_005701136.1 cyd operon protein YbgE -
  NJ8700_RS11205 - 1360094..1360192 (-) 99 WP_005701137.1 CydX/CbdX family cytochrome bd oxidase small subunit -
  NJ8700_RS06180 (NJ8700_06335) cydB 1360202..1361338 (-) 1137 WP_005701138.1 cytochrome d ubiquinol oxidase subunit II -
  NJ8700_RS06185 (NJ8700_06340) - 1361353..1362918 (-) 1566 WP_005703793.1 cytochrome ubiquinol oxidase subunit I -
  NJ8700_RS06190 (NJ8700_06345) - 1363425..1363700 (+) 276 WP_012771681.1 DUF5339 domain-containing protein -
  NJ8700_RS06195 (NJ8700_06350) ruvB 1363755..1364759 (-) 1005 WP_005701144.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NJ8700_RS06200 (NJ8700_06355) ruvA 1364775..1365389 (-) 615 WP_005701145.1 Holliday junction branch migration protein RuvA Machinery gene
  NJ8700_RS06205 (NJ8700_06360) ruvC 1365454..1366026 (-) 573 WP_005701148.1 crossover junction endodeoxyribonuclease RuvC -
  NJ8700_RS06210 (NJ8700_06365) - 1366085..1366498 (-) 414 WP_005701150.1 hypothetical protein -
  NJ8700_RS06215 (NJ8700_06370) - 1366510..1367250 (-) 741 WP_005701152.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NJ8700_RS06220 (NJ8700_06375) nudB 1367326..1367760 (-) 435 WP_005701153.1 dihydroneopterin triphosphate diphosphatase -
  NJ8700_RS11210 - 1367791..1367979 (-) 189 WP_005703788.1 hypothetical protein -
  NJ8700_RS06225 (NJ8700_06380) aspS 1368287..1370065 (-) 1779 WP_005701156.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.41 Da        Isoelectric Point: 6.6548

>NTDB_id=111804 NJ8700_RS06200 WP_005701145.1 1364775..1365389(-) (ruvA) [Aggregatibacter aphrophilus NJ8700]
MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLLFGFSQKTDRTLFRELIKTNG
VGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKTAERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIEP
SNEAVAALIALGYKPLDAEKMVKKVSKPELSSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=111804 NJ8700_RS06200 WP_005701145.1 1364775..1365389(-) (ruvA) [Aggregatibacter aphrophilus NJ8700]
ATGATCGGCCATTTAACCGGCATTTTAATGGAAAAACAACCTCCGGAAATTTTATTGGATGTGCAAGGCGTAGGGTATGA
ACTTTTATTGCCTATGACCAGTTTCTACAACTTGCCGGAGGTGGGCAAGCAAACTAGTTTATTTACGCATTTGGTGGTGC
GAGAAGACGCCCATTTGCTTTTTGGATTTTCGCAAAAAACCGACCGCACTTTATTTCGTGAACTCATCAAAACCAATGGC
GTGGGGCCGAAGCTGGCGTTGGCGATTTTGTCCGCGATGTCAGTGGATGAGTTTGCCTATGCCATTGAGCGCGAGGAATT
ATCCCGTTTAGTTAAAATTCCGGGGATTGGTAAGAAAACGGCAGAACGCTTGTTGGTTGAATTAAAAGGTAAATTTAAAG
AAGTGAAAACCCATGATTTCTTTGTACAGGGCGATCACTTGCCAAGTGTTAATGCTGAAACCGTAGCGACAATTGAACCT
TCAAATGAAGCAGTAGCTGCATTGATAGCCTTGGGTTATAAACCATTGGATGCTGAAAAGATGGTGAAAAAAGTCTCCAA
ACCGGAGCTTTCCAGTGAGCAATTAATTCGCGAAGCATTGAAAGCAGCATTGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.377

100

0.368

Multiple sequence alignment