Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NJ8700_RS02005 Genome accession   NZ_CP009230
Coordinates   456943..457575 (-) Length   210 a.a.
NCBI ID   WP_005700182.1    Uniprot ID   A0AAP7GZG1
Organism   Aggregatibacter aphrophilus NJ8700     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 451943..462575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS02005 (NJ8700_02060) sxy/tfoX 456943..457575 (-) 633 WP_005700182.1 TfoX/Sxy family protein Regulator
  NJ8700_RS02010 (NJ8700_02065) fdhE 457875..458792 (-) 918 WP_005700184.1 formate dehydrogenase accessory protein FdhE -
  NJ8700_RS02015 (NJ8700_02070) - 458882..459709 (-) 828 WP_238524192.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  NJ8700_RS11610 - 459709..459996 (-) 288 WP_005700186.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  NJ8700_RS02020 (NJ8700_02075) - 460118..460534 (+) 417 WP_005700187.1 NirD/YgiW/YdeI family stress tolerance protein -
  NJ8700_RS02025 (NJ8700_02080) - 460629..461300 (+) 672 WP_005700188.1 response regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24346.72 Da        Isoelectric Point: 10.3131

>NTDB_id=111789 NJ8700_RS02005 WP_005700182.1 456943..457575(-) (sxy/tfoX) [Aggregatibacter aphrophilus NJ8700]
MSNIISQLQLEFSELIEDVKVKNLFNGHGIFHQDIMFALHQNGSIYIKAEGDLVSYLEKLGAVAYAINHDSMKKLALYNY
YQLPNSIRRNKEKFKEILILAIKQAKAKKLSDELSKKERIKELANFSIKHERLLAKVNIYTVTEYRKLGAYHSFIRLKKL
GIPANIDLLWTFIAALKNKHVSLLSEEEKKKKLIKLNDLLESNGLRKMKM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=111789 NJ8700_RS02005 WP_005700182.1 456943..457575(-) (sxy/tfoX) [Aggregatibacter aphrophilus NJ8700]
ATGAGTAATATCATATCACAACTGCAACTTGAGTTTTCGGAACTTATCGAAGATGTTAAAGTTAAAAATTTATTTAACGG
CCATGGTATTTTTCATCAAGATATTATGTTTGCTTTACATCAAAATGGTAGCATTTACATAAAAGCAGAAGGAGATTTAG
TATCCTATTTGGAGAAACTAGGAGCTGTAGCTTATGCAATTAACCATGATAGTATGAAGAAGCTAGCCCTATATAATTAT
TATCAATTACCAAATTCAATTCGGAGAAACAAGGAAAAATTTAAAGAAATCCTTATTCTCGCTATAAAGCAAGCAAAAGC
TAAAAAACTTTCTGATGAGCTATCTAAAAAAGAACGTATTAAAGAACTAGCTAACTTTTCTATAAAACACGAAAGACTCC
TAGCTAAGGTCAACATTTATACAGTAACTGAATATCGAAAATTAGGTGCCTATCATAGTTTTATTAGACTAAAGAAACTT
GGTATTCCTGCAAATATTGATTTATTGTGGACCTTCATTGCCGCATTAAAAAACAAACATGTAAGTTTACTCTCTGAAGA
GGAGAAAAAGAAAAAGCTAATAAAGTTAAATGATTTATTAGAAAGTAATGGATTACGTAAAATGAAGATGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(117-191)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAP7GZG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.306

93.333

0.376

Multiple sequence alignment