Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL053_RS17185 Genome accession   NZ_LR134079
Coordinates   3392375..3393004 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC9112     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3381297..3404193 3392375..3393004 within 0


Gene organization within MGE regions


Location: 3381297..3404193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL053_RS17120 (NCTC9112_03422) - 3381297..3382316 (+) 1020 WP_001563016.1 tyrosine-type recombinase/integrase -
  EL053_RS17130 (NCTC9112_03423) yccA 3382724..3383383 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  EL053_RS17135 (NCTC9112_03424) tusE 3383474..3383803 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  EL053_RS17140 (NCTC9112_03425) yccX 3383800..3384078 (-) 279 WP_000048228.1 acylphosphatase -
  EL053_RS17145 (NCTC9112_03426) rlmI 3384173..3385363 (+) 1191 WP_000116293.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  EL053_RS17150 (NCTC9112_03427) hspQ 3385421..3385738 (+) 318 WP_001295356.1 heat shock protein HspQ -
  EL053_RS17155 (NCTC9112_03428) yccU 3385783..3386196 (-) 414 WP_000665217.1 CoA-binding protein -
  EL053_RS17160 (NCTC9112_03429) yccT 3386369..3387031 (+) 663 WP_000847791.1 DUF2057 family protein -
  EL053_RS17165 (NCTC9112_03430) mgsA 3387127..3387585 (+) 459 WP_000424181.1 methylglyoxal synthase -
  EL053_RS17170 (NCTC9112_03431) helD 3387617..3389671 (-) 2055 WP_021577221.1 DNA helicase IV -
  EL053_RS17175 (NCTC9112_03432) yccF 3389794..3390240 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL053_RS17180 (NCTC9112_03433) yccS 3390250..3392412 (+) 2163 WP_000323868.1 YccS family putative transporter -
  EL053_RS17185 (NCTC9112_03434) sxy/tfoX 3392375..3393004 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL053_RS17190 (NCTC9112_03435) sulA 3393223..3393732 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  EL053_RS17195 (NCTC9112_03436) ompA 3394089..3395144 (+) 1056 WP_000750414.1 porin OmpA -
  EL053_RS17200 (NCTC9112_03437) matP 3395220..3395672 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL053_RS17205 (NCTC9112_03438) ycbZ 3395858..3397618 (+) 1761 WP_000156510.1 Lon protease family protein -
  EL053_RS17210 (NCTC9112_03439) fabA 3397687..3398205 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  EL053_RS17215 (NCTC9112_03440) rmf 3398275..3398442 (-) 168 WP_000828648.1 ribosome modulation factor -
  EL053_RS17220 (NCTC9112_03441) pqiC 3398698..3399261 (-) 564 WP_000759120.1 membrane integrity-associated transporter subunit PqiC -
  EL053_RS17225 (NCTC9112_03442) pqiB 3399258..3400898 (-) 1641 WP_000445541.1 intermembrane transport protein PqiB -
  EL053_RS17230 (NCTC9112_03443) pqiA 3400903..3402156 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  EL053_RS17235 (NCTC9112_03444) uup 3402286..3404193 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117889 EL053_RS17185 WP_000839153.1 3392375..3393004(-) (sxy/tfoX) [Escherichia coli strain NCTC9112]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117889 EL053_RS17185 WP_000839153.1 3392375..3393004(-) (sxy/tfoX) [Escherichia coli strain NCTC9112]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment