Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ELZ47_RS08035 Genome accession   NZ_LR134002
Coordinates   1621560..1623362 (-) Length   600 a.a.
NCBI ID   WP_126435751.1    Uniprot ID   A0AAJ5TB79
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616560..1628362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS08020 (NCTC10904_01575) - 1619032..1619613 (-) 582 WP_197715318.1 LURP-one-related/scramblase family protein -
  ELZ47_RS08025 (NCTC10904_01577) prsA 1619754..1620761 (-) 1008 WP_126435750.1 peptidylprolyl isomerase PrsA -
  ELZ47_RS08030 (NCTC10904_01578) - 1620875..1621558 (-) 684 WP_002900808.1 O-methyltransferase -
  ELZ47_RS08035 (NCTC10904_01579) pepF 1621560..1623362 (-) 1803 WP_126435751.1 oligoendopeptidase F Regulator
  ELZ47_RS08040 (NCTC10904_01580) coiA 1623398..1624342 (-) 945 WP_126435752.1 competence protein CoiA Machinery gene
  ELZ47_RS08045 (NCTC10904_01581) - 1624455..1625624 (-) 1170 WP_126435753.1 MFS transporter -
  ELZ47_RS08050 (NCTC10904_01582) - 1625719..1627074 (-) 1356 WP_126435754.1 DUF1958 domain-containing protein -
  ELZ47_RS08055 (NCTC10904_01583) nagB 1627226..1627933 (-) 708 WP_126435755.1 glucosamine-6-phosphate deaminase -
  ELZ47_RS08060 - 1628068..1628247 (+) 180 WP_164549594.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69119.13 Da        Isoelectric Point: 4.4824

>NTDB_id=1117824 ELZ47_RS08035 WP_126435751.1 1621560..1623362(-) (pepF) [Streptococcus sanguinis strain NCTC 10904]
MAKQRNEIEEKYTWDLSTIFPTDEAFEAELAQVSEEVKKAASLAGHLLDSADSLLTTTEVQLDLMCRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSDFGQSFAFYEPEFMAITEEQYQAFLAEQPGLQLYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVHDEDGNEVQLTHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLNKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFSVFERRLDEFEALVEKLGLV

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1117824 ELZ47_RS08035 WP_126435751.1 1621560..1623362(-) (pepF) [Streptococcus sanguinis strain NCTC 10904]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGAGCACCATTTTCCCAACAGATGAAGCCTTTGA
AGCTGAATTGGCGCAGGTTTCAGAAGAAGTGAAGAAAGCAGCTAGTCTGGCTGGACATTTGCTGGATTCAGCGGACAGTC
TCTTAACAACGACTGAAGTGCAGCTGGACTTGATGTGTCGTATTGAAAAGCTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACACGTGTGGCTAAGTACCAAGAGTATCAGGCTAAAGGCATGACTCTTTACAGCGATTTTGGTCAAAGCTTTGC
CTTCTACGAGCCCGAATTTATGGCGATTACAGAAGAGCAGTACCAAGCTTTCCTGGCTGAGCAGCCAGGTTTACAGCTGT
ATCAGCATTATTTTGACAAGCTTTTGAAAAAGAAAGCTCACATCCTGACACAGCGTGAAGAGGAGCTACTGGCTGGTGCT
GGTGAAATCTTTGGGGCAGCTGGCGAAACCTTTGCTATTTTGGATAATGCAGATATTGTCTTTCCGATGGTGCATGATGA
AGATGGAAATGAAGTTCAGCTTACCCACGGTAACTATATCACCCTGGTCGAGTCTAAGAACCGAGAAGTCCGTAAGGAAG
CCTACGAGGCTCTTTACAGCGTCTACGAGCAGTACCAGCATACCTACGCTAAGACTCTGCAGACCAATGTCAAGGTCCAC
AACTACAATGCGAAAGTCCGCAAGTTCTCATCTGCCCGTGAAGCGGCCTTGTCAGCGGACTTTATTCCAGAAAGTGTCTA
TGACAGCTTAGTTTCAGCTGTCAATAAGCATTTGCCTCTTTTGCAGCGTTATATTGCTTTGCGAGCGAAGATTTTAGGCA
TTTCTGACTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTTCTGGCTATTCTGGGTGAGGATTATTTGAGCCGAGTCAAGACAGCTTTTTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGCAAGCGCTCAGGAGCATACTCAGGCGGGTCTTATGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGACACGCTGGATAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCCAGTTATACTCGTGAGACC
CAGCCTTATGTCTATGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACTAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAGGACGATGCTACTCGCTTTGCTATCCTCAATCACTTCTTGGATGGCTTCCGGGGCACAGTCT
TCCGTCAAACCCAGTTTGCGGAGTTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGTCAAGTTTTGACCAGCGAGTTT
CTCAATGAGCTCTACGCTGATTTGAACGAGAAATACTATGGTTTGAATAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCACGGATTCCGCATTTCTACTATGACTACTATGTTTTCCAATATTCGACAGGCTTTTCAGCAGCTTCTGCCTTAGCTG
AAAAGATTGTCCATGGCAGTCAGGAAGACAAGGATAAATATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCCCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTACCTAAATGCTGCTTTTTCTGTCTTTGAGCGTCGTCT
AGACGAATTCGAGGCCTTGGTAGAAAAGTTGGGACTGGTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682

Multiple sequence alignment