Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL063_RS11150 Genome accession   NZ_LR133932
Coordinates   2357285..2357908 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain NCTC11356     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352285..2362908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL063_RS11130 (NCTC11356_02205) matP 2353697..2354149 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  EL063_RS11135 (NCTC11356_02206) tnpA 2354368..2354802 (+) 435 WP_004111117.1 IS200/IS605 family transposase -
  EL063_RS11140 (NCTC11356_02207) ompA 2354890..2355960 (-) 1071 WP_004100770.1 porin OmpA -
  EL063_RS11145 (NCTC11356_02208) sulA 2356314..2356823 (-) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  EL063_RS11150 (NCTC11356_02209) sxy/tfoX 2357285..2357908 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  EL063_RS11155 (NCTC11356_02210) yccS 2357896..2360031 (-) 2136 WP_105890006.1 YccS family putative transporter -
  EL063_RS11160 (NCTC11356_02211) - 2360049..2360495 (-) 447 WP_004100782.1 YccF domain-containing protein -
  EL063_RS11165 helD 2360618..2362671 (+) 2054 Protein_2142 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=1117666 EL063_RS11150 WP_004100775.1 2357285..2357908(+) (sxy/tfoX) [Klebsiella oxytoca strain NCTC11356]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1117666 EL063_RS11150 WP_004100775.1 2357285..2357908(+) (sxy/tfoX) [Klebsiella oxytoca strain NCTC11356]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment