Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FVE81_RS15350 Genome accession   NZ_LR130564
Coordinates   3121983..3122612 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS14387 isolate MS14387     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116983..3127612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE81_RS15335 helD 3117225..3119279 (-) 2055 WP_001305911.1 DNA helicase IV -
  FVE81_RS15340 yccF 3119402..3119848 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FVE81_RS15345 yccS 3119858..3122020 (+) 2163 WP_000875041.1 YccS family putative transporter -
  FVE81_RS15350 sxy/tfoX 3121983..3122612 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FVE81_RS15355 sulA 3122831..3123340 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FVE81_RS15360 ompA 3123696..3124736 (+) 1041 WP_001309394.1 porin OmpA -
  FVE81_RS15365 matP 3124812..3125264 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FVE81_RS15370 ycbZ 3125450..3127210 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117534 FVE81_RS15350 WP_000839153.1 3121983..3122612(-) (sxy/tfoX) [Escherichia coli strain MS14387 isolate MS14387]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117534 FVE81_RS15350 WP_000839153.1 3121983..3122612(-) (sxy/tfoX) [Escherichia coli strain MS14387 isolate MS14387]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment