Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW037_RS15470 Genome accession   NZ_LR130562
Coordinates   3137635..3138264 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS14384 isolate MS14384     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3132635..3143264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW037_RS15455 helD 3132877..3134931 (-) 2055 WP_001595613.1 DNA helicase IV -
  EW037_RS15460 yccF 3135054..3135500 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW037_RS15465 yccS 3135510..3137672 (+) 2163 WP_001550920.1 YccS family putative transporter -
  EW037_RS15470 sxy/tfoX 3137635..3138264 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW037_RS15475 sulA 3138483..3138992 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  EW037_RS15480 ompA 3139349..3140401 (+) 1053 WP_000750418.1 porin OmpA -
  EW037_RS15485 matP 3140476..3140928 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW037_RS15490 ycbZ 3141114..3142874 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117512 EW037_RS15470 WP_000839153.1 3137635..3138264(-) (sxy/tfoX) [Escherichia coli strain MS14384 isolate MS14384]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117512 EW037_RS15470 WP_000839153.1 3137635..3138264(-) (sxy/tfoX) [Escherichia coli strain MS14384 isolate MS14384]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment