Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW040_RS15460 Genome accession   NZ_LR130555
Coordinates   3157085..3157714 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS14385 isolate MS14385     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152085..3162714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW040_RS15445 helD 3152327..3154381 (-) 2055 WP_038431999.1 DNA helicase IV -
  EW040_RS15450 yccF 3154504..3154950 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW040_RS15455 yccS 3154960..3157122 (+) 2163 WP_072258314.1 YccS family putative transporter -
  EW040_RS15460 sxy/tfoX 3157085..3157714 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW040_RS15465 sulA 3157933..3158442 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  EW040_RS15470 ompA 3158799..3159839 (+) 1041 WP_022645481.1 porin OmpA -
  EW040_RS15475 matP 3159916..3160368 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW040_RS15480 ycbZ 3160554..3162314 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117490 EW040_RS15460 WP_000839153.1 3157085..3157714(-) (sxy/tfoX) [Escherichia coli strain MS14385 isolate MS14385]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117490 EW040_RS15460 WP_000839153.1 3157085..3157714(-) (sxy/tfoX) [Escherichia coli strain MS14385 isolate MS14385]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment