Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW035_RS14130 Genome accession   NZ_LR130552
Coordinates   2921828..2922457 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS14386 isolate MS14386     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916828..2927457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW035_RS14115 helD 2917070..2919124 (-) 2055 WP_000420536.1 DNA helicase IV -
  EW035_RS14120 yccF 2919247..2919693 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW035_RS14125 yccS 2919703..2921865 (+) 2163 WP_000875019.1 YccS family putative transporter -
  EW035_RS14130 sxy/tfoX 2921828..2922457 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW035_RS14135 sulA 2922676..2923185 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EW035_RS14140 ompA 2923542..2924594 (+) 1053 WP_000750419.1 porin OmpA -
  EW035_RS14145 matP 2924669..2925121 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  EW035_RS14150 ycbZ 2925307..2927067 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117467 EW035_RS14130 WP_000839153.1 2921828..2922457(-) (sxy/tfoX) [Escherichia coli strain MS14386 isolate MS14386]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117467 EW035_RS14130 WP_000839153.1 2921828..2922457(-) (sxy/tfoX) [Escherichia coli strain MS14386 isolate MS14386]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment