Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW036_RS08820 Genome accession   NZ_LR130545
Coordinates   1804427..1805056 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain B36 isolate B36     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799427..1810056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW036_RS08800 ycbZ 1799817..1801577 (-) 1761 WP_000156502.1 Lon protease family protein -
  EW036_RS08805 matP 1801763..1802215 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  EW036_RS08810 ompA 1802291..1803343 (-) 1053 WP_001346420.1 porin OmpA -
  EW036_RS08815 sulA 1803699..1804208 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  EW036_RS08820 sxy/tfoX 1804427..1805056 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW036_RS08825 yccS 1805019..1807181 (-) 2163 WP_000875041.1 YccS family putative transporter -
  EW036_RS08830 yccF 1807191..1807637 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EW036_RS08835 helD 1807760..1809814 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1117418 EW036_RS08820 WP_000839151.1 1804427..1805056(+) (sxy/tfoX) [Escherichia coli strain B36 isolate B36]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117418 EW036_RS08820 WP_000839151.1 1804427..1805056(+) (sxy/tfoX) [Escherichia coli strain B36 isolate B36]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment