Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW041_RS17425 Genome accession   NZ_LR130544
Coordinates   3517725..3518321 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain 03-311-0071 isolate 03-311-0071     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3512725..3523321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW041_RS17410 helD 3512933..3514987 (-) 2055 WP_129766017.1 DNA helicase IV -
  EW041_RS17415 - 3515112..3515558 (+) 447 WP_012542294.1 YccF domain-containing protein -
  EW041_RS17420 yccS 3515576..3517711 (+) 2136 WP_008805895.1 YccS family putative transporter -
  EW041_RS17425 sxy/tfoX 3517725..3518321 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  EW041_RS17435 sulA 3518672..3519181 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  EW041_RS17440 ompA 3519534..3520586 (+) 1053 WP_008805892.1 porin OmpA -
  EW041_RS17445 matP 3520697..3521149 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  EW041_RS17450 - 3521335..3523092 (+) 1758 WP_046882325.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1117397 EW041_RS17425 WP_012542296.1 3517725..3518321(-) (sxy/tfoX) [Klebsiella variicola strain 03-311-0071 isolate 03-311-0071]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1117397 EW041_RS17425 WP_012542296.1 3517725..3518321(-) (sxy/tfoX) [Klebsiella variicola strain 03-311-0071 isolate 03-311-0071]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment