Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW039_RS17260 Genome accession   NZ_LR130543
Coordinates   3460397..3460993 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain 04153260899A isolate 04153260899A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3455397..3465993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW039_RS17245 helD 3455605..3457659 (-) 2055 WP_016160584.1 DNA helicase IV -
  EW039_RS17250 - 3457784..3458230 (+) 447 WP_012542294.1 YccF domain-containing protein -
  EW039_RS17255 yccS 3458248..3460383 (+) 2136 WP_008805895.1 YccS family putative transporter -
  EW039_RS17260 sxy/tfoX 3460397..3460993 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  EW039_RS17270 sulA 3461344..3461853 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  EW039_RS17275 ompA 3462206..3463258 (+) 1053 WP_008805892.1 porin OmpA -
  EW039_RS17280 matP 3463369..3463821 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  EW039_RS17285 - 3464007..3465764 (+) 1758 WP_064170867.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1117374 EW039_RS17260 WP_012542296.1 3460397..3460993(-) (sxy/tfoX) [Klebsiella variicola strain 04153260899A isolate 04153260899A]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1117374 EW039_RS17260 WP_012542296.1 3460397..3460993(-) (sxy/tfoX) [Klebsiella variicola strain 04153260899A isolate 04153260899A]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment