Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW045_RS17435 Genome accession   NZ_LR130541
Coordinates   3455942..3456538 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain AJ218 isolate AJ218     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3450942..3461538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW045_RS17420 helD 3451150..3453204 (-) 2055 WP_004176653.1 DNA helicase IV -
  EW045_RS17425 - 3453329..3453775 (+) 447 WP_002898425.1 YccF domain-containing protein -
  EW045_RS17430 yccS 3453793..3455928 (+) 2136 WP_004213263.1 YccS family putative transporter -
  EW045_RS17435 sxy/tfoX 3455942..3456538 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  EW045_RS17445 sulA 3456887..3457396 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  EW045_RS17450 ompA 3457749..3458819 (+) 1071 WP_002898408.1 porin OmpA -
  EW045_RS17455 matP 3458951..3459403 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  EW045_RS17460 - 3459589..3461346 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1117351 EW045_RS17435 WP_004179217.1 3455942..3456538(-) (sxy/tfoX) [Klebsiella pneumoniae strain AJ218 isolate AJ218]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1117351 EW045_RS17435 WP_004179217.1 3455942..3456538(-) (sxy/tfoX) [Klebsiella pneumoniae strain AJ218 isolate AJ218]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment