Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW050_RS17715 Genome accession   NZ_LR130539
Coordinates   3559711..3560307 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain AJ055 isolate AJ055     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554711..3565307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW050_RS17700 helD 3554919..3556973 (-) 2055 WP_016160584.1 DNA helicase IV -
  EW050_RS17705 - 3557098..3557544 (+) 447 WP_008805896.1 YccF domain-containing protein -
  EW050_RS17710 yccS 3557562..3559697 (+) 2136 WP_008805895.1 YccS family putative transporter -
  EW050_RS17715 sxy/tfoX 3559711..3560307 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  EW050_RS17725 sulA 3560658..3561167 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  EW050_RS17730 ompA 3561520..3562572 (+) 1053 WP_008805892.1 porin OmpA -
  EW050_RS17735 matP 3562683..3563135 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  EW050_RS17740 - 3563321..3565078 (+) 1758 WP_012968609.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1117327 EW050_RS17715 WP_012542296.1 3559711..3560307(-) (sxy/tfoX) [Klebsiella variicola strain AJ055 isolate AJ055]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1117327 EW050_RS17715 WP_012542296.1 3559711..3560307(-) (sxy/tfoX) [Klebsiella variicola strain AJ055 isolate AJ055]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGTTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment