Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW044_RS17305 Genome accession   NZ_LR130538
Coordinates   3478791..3479387 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain AJ292 isolate AJ292     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473791..3484387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW044_RS17290 helD 3473999..3476053 (-) 2055 WP_016160584.1 DNA helicase IV -
  EW044_RS17295 - 3476178..3476624 (+) 447 WP_012542294.1 YccF domain-containing protein -
  EW044_RS17300 yccS 3476642..3478777 (+) 2136 WP_008805895.1 YccS family putative transporter -
  EW044_RS17305 sxy/tfoX 3478791..3479387 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  EW044_RS17315 sulA 3479738..3480247 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  EW044_RS17320 ompA 3480600..3481652 (+) 1053 WP_008805892.1 porin OmpA -
  EW044_RS17325 matP 3481763..3482215 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  EW044_RS17330 - 3482401..3484158 (+) 1758 WP_039103045.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1117303 EW044_RS17305 WP_012542296.1 3478791..3479387(-) (sxy/tfoX) [Klebsiella variicola strain AJ292 isolate AJ292]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1117303 EW044_RS17305 WP_012542296.1 3478791..3479387(-) (sxy/tfoX) [Klebsiella variicola strain AJ292 isolate AJ292]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment