Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EJN62_RS10870 Genome accession   NZ_LR130534
Coordinates   2275162..2275797 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa isolate paerg005     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270162..2280797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN62_RS10855 (BANRA_02095) - 2270869..2272113 (+) 1245 WP_023095394.1 lipoprotein-releasing ABC transporter permease subunit -
  EJN62_RS10860 (BANRA_02096) - 2272201..2272734 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  EJN62_RS10865 - 2272877..2275089 (+) 2213 Protein_2093 DNA internalization-related competence protein ComEC/Rec2 -
  EJN62_RS10870 (BANRA_02099) exbB 2275162..2275797 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EJN62_RS10875 (BANRA_02100) - 2275794..2276234 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  EJN62_RS10880 (BANRA_02101) lpxK 2276234..2277232 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  EJN62_RS10885 (BANRA_02102) - 2277270..2277455 (+) 186 WP_003091157.1 Trm112 family protein -
  EJN62_RS10890 (BANRA_02103) kdsB 2277455..2278219 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EJN62_RS10895 (BANRA_02104) - 2278219..2278683 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  EJN62_RS10900 (BANRA_02105) murB 2278680..2279699 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1117166 EJN62_RS10870 WP_003091163.1 2275162..2275797(+) (exbB) [Pseudomonas aeruginosa isolate paerg005]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1117166 EJN62_RS10870 WP_003091163.1 2275162..2275797(+) (exbB) [Pseudomonas aeruginosa isolate paerg005]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment