Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EJK95_RS08770 Genome accession   NZ_LR130532
Coordinates   1828078..1828707 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate ecoli019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823078..1833707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJK95_RS08750 (BANRA_01741) ycbZ 1823471..1825231 (-) 1761 WP_106474576.1 Lon protease family protein -
  EJK95_RS08755 (BANRA_01742) matP 1825417..1825869 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  EJK95_RS08760 (BANRA_01743) ompA 1825944..1826996 (-) 1053 WP_000750419.1 porin OmpA -
  EJK95_RS08765 (BANRA_01744) sulA 1827350..1827859 (-) 510 WP_106474577.1 SOS-induced cell division inhibitor SulA -
  EJK95_RS08770 (BANRA_01745) sxy/tfoX 1828078..1828707 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EJK95_RS08775 (BANRA_01746) yccS 1828670..1830832 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EJK95_RS08780 (BANRA_01747) yccF 1830842..1831288 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EJK95_RS08785 (BANRA_01748) helD 1831411..1833465 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1117105 EJK95_RS08770 WP_000839153.1 1828078..1828707(+) (sxy/tfoX) [Escherichia coli isolate ecoli019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1117105 EJK95_RS08770 WP_000839153.1 1828078..1828707(+) (sxy/tfoX) [Escherichia coli isolate ecoli019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GAGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment