Detailed information NTG1116719

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: EW022_RS01430
• Genome accession: NZ_LR130240
• Coordinates: 264415..265341 (+)
• Length: 308 a.a.
• NCBI ID: WP_002986004.1
• Uniprot ID: Q1JNF8
• Organism: Streptococcus pyogenes strain PS006 isolate PS006
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 259415..270341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EW022_RS01420	amiA	260878..262848 (+)	1971	WP_021340820.1	peptide ABC transporter substrate-binding protein	Regulator
EW022_RS01425	amiC	262913..264415 (+)	1503	WP_002992227.1	ABC transporter permease	Regulator
EW022_RS01430	amiD	264415..265341 (+)	927	WP_002986004.1	oligopeptide ABC transporter permease OppC	Regulator
EW022_RS01435	amiE	265350..266420 (+)	1071	WP_010921893.1	ABC transporter ATP-binding protein	Regulator
EW022_RS01440	amiF	266413..267336 (+)	924	WP_002986000.1	ABC transporter ATP-binding protein	Regulator
EW022_RS09705	-	267374..267457 (-)	84	Protein_235	IS3 family transposase	-
EW022_RS09710	-	267595..267910 (-)	316	Protein_236	IS3 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34862.81 Da
• Isoelectric Point: 8.5670

>NTDB_id=1116719 EW022_RS01430 WP_002986004.1 264415..265341(+) (amiD) [Streptococcus pyogenes strain PS006 isolate PS006]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide

• Length: 927 bp

>NTDB_id=1116719 EW022_RS01430 WP_002986004.1 264415..265341(+) (amiD) [Streptococcus pyogenes strain PS006 isolate PS006]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-72)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-305)

3D structure

• AlphaFold DB: Q1JNF8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	73.701	100	0.737
amiD	Streptococcus thermophilus LMG 18311	73.052	100	0.731
amiD	Streptococcus thermophilus LMD-9	73.052	100	0.731