Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   JL26_RS10800 Genome accession   NZ_CP009158
Coordinates   2173076..2175289 (+) Length   737 a.a.
NCBI ID   WP_016527474.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH03     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2168076..2180289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL26_RS10780 (JL26_11075) - 2168827..2170044 (+) 1218 WP_005711010.1 pyridoxal phosphate-dependent aminotransferase -
  JL26_RS10785 (JL26_11080) - 2170312..2171283 (+) 972 WP_038513851.1 IS110 family transposase -
  JL26_RS10790 (JL26_11085) rarD 2171329..2172210 (+) 882 WP_026916579.1 EamA family transporter RarD -
  JL26_RS10795 (JL26_11090) rarD 2172210..2173076 (+) 867 WP_035490898.1 EamA family transporter RarD -
  JL26_RS10800 (JL26_11095) priA 2173076..2175289 (+) 2214 WP_016527474.1 primosomal protein N' Machinery gene
  JL26_RS10805 (JL26_11100) thiB 2175329..2176309 (-) 981 WP_005711006.1 thiamine ABC transporter substrate binding subunit -
  JL26_RS10810 (JL26_11105) - 2176548..2177615 (+) 1068 WP_010786136.1 PhoH family protein -
  JL26_RS12920 - 2177660..2177810 (+) 151 Protein_2155 transposase -
  JL26_RS10815 - 2177874..2178344 (-) 471 Protein_2156 IS256 family transposase -
  JL26_RS12670 (JL26_11115) - 2178311..2178493 (-) 183 WP_021114114.1 hypothetical protein -
  JL26_RS10825 (JL26_11120) - 2178648..2178878 (-) 231 WP_021115075.1 zinc ribbon domain-containing protein -
  JL26_RS10830 (JL26_11125) menH 2178887..2179654 (-) 768 WP_035490893.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 83301.57 Da        Isoelectric Point: 8.8718

>NTDB_id=111641 JL26_RS10800 WP_016527474.1 2173076..2175289(+) (priA) [Glaesserella parasuis strain SH03]
MNLIRIALPVPLARYFDYLLPTHFENVVKGARVVVPFGRQRKIGIVVDFPTTSDIPTEKLKPIEQLLDEQALFDTEMWQL
LQWASRYYHAPFGEVLQSALPVKLRQGESSERTAPDYFVVTENGRKALSNGVVQKAKKQQELLSKLAEFANFFEKPTACS
PAVWKALFEKGYLEKLEIPFNVQSWQEKLGEQPICNTQNRLTLNKQQTLVVSRLHYQQGFGAFLLNGVTGSGKTEVYLQV
IEEVLKRGEQVLVLVPEIGLTPQTIQRFQARFNVEIDALHSHLNDTQRLNAWLRAKNGESAIVIGTRSALFTQFQQLGLI
IIDEEHDGSFKQQDGWRYHARDLAVLRAKNNNIPIILGSATPSFESLQNVQNGKFIELQLTARAGNAHFSKQTLIDLKKQ
RIYSGLSEKLLAMMQAHLEKGNQVMLFLNRRGFAPVLLCHECGWIADCPSCDKPFTYHQKQRVLRCHHCASQKAIPRQCG
HCGSVNLITTGIGTEQLEQVLAQRFPQYSITRIDRDSTARKGSLEQHLAEIQAGKSQILIGTQMLAKGHHFPNVTLVAIV
NVDSSLFSTDYRAEERLAQLYVQVSGRAGRAEKQGEVVLQTHYPDHPLLTSLLNDGYLAFASQALAMRKIMSLPPFSSQV
LIRATGRDNDKVANFLQDLTACLHQIISENGWQGFQLLGPFNAPMAKKAGHYRWQLLIQHSARSAIQQLLDRFDEQKEQF
LRNDIRLTVDIDPQELG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=111641 JL26_RS10800 WP_016527474.1 2173076..2175289(+) (priA) [Glaesserella parasuis strain SH03]
ATGAACCTCATCCGAATTGCTCTACCTGTGCCGTTGGCACGTTATTTCGATTACCTGCTTCCAACGCATTTTGAAAATGT
GGTGAAGGGGGCTAGGGTTGTTGTGCCTTTTGGTCGCCAGCGTAAAATCGGGATTGTGGTGGATTTCCCAACCACATCAG
ATATTCCCACCGAAAAACTGAAACCGATTGAGCAACTGTTAGATGAACAAGCTCTGTTTGACACTGAAATGTGGCAACTT
TTACAGTGGGCAAGCCGTTATTATCACGCCCCTTTCGGCGAAGTGCTACAAAGTGCTTTGCCTGTCAAACTACGACAAGG
GGAAAGTAGTGAACGCACTGCTCCCGACTATTTTGTTGTCACGGAAAACGGCAGAAAAGCTCTATCCAACGGCGTGGTTC
AAAAGGCAAAAAAACAACAAGAGCTATTAAGCAAACTGGCGGAATTTGCAAATTTCTTTGAAAAACCGACCGCTTGTAGC
CCTGCGGTATGGAAAGCTTTGTTTGAAAAAGGGTATCTGGAAAAGCTGGAAATCCCTTTTAACGTGCAAAGCTGGCAGGA
AAAATTAGGCGAACAGCCGATTTGCAACACTCAAAACCGTTTAACGTTGAATAAACAGCAGACCCTTGTCGTCAGCCGTT
TGCATTATCAACAAGGCTTCGGAGCGTTTTTGCTCAATGGGGTCACTGGCTCAGGGAAAACGGAAGTCTATCTGCAAGTG
ATCGAAGAAGTGCTGAAACGGGGCGAGCAAGTGTTGGTGCTTGTGCCTGAAATCGGGCTGACCCCACAAACTATTCAACG
TTTCCAAGCTCGTTTTAACGTGGAAATTGACGCATTGCATTCGCATCTTAACGACACTCAACGGCTCAATGCGTGGCTTC
GAGCAAAAAACGGCGAAAGTGCAATTGTGATCGGCACACGTTCCGCCTTGTTCACCCAGTTTCAGCAACTTGGCTTAATC
ATTATTGATGAAGAACACGATGGCTCGTTCAAACAGCAAGACGGCTGGCGTTATCACGCACGGGATTTGGCGGTGCTTCG
AGCGAAAAATAACAACATTCCGATTATTCTCGGCTCGGCAACGCCAAGTTTTGAAAGTTTGCAAAATGTGCAAAACGGTA
AATTTATCGAACTTCAGCTTACTGCAAGGGCTGGTAATGCACATTTTTCCAAACAAACCTTAATTGATTTGAAAAAACAG
CGGATTTATTCGGGCTTATCGGAAAAGTTGTTAGCAATGATGCAAGCTCACTTGGAAAAAGGCAATCAAGTGATGTTGTT
TTTAAACCGACGGGGGTTTGCCCCTGTTTTACTTTGCCACGAATGTGGCTGGATTGCCGATTGCCCGTCCTGTGATAAGC
CCTTTACCTATCACCAAAAACAGCGAGTATTGCGTTGCCATCACTGTGCTTCGCAAAAAGCCATTCCACGTCAGTGCGGA
CATTGTGGCTCAGTCAATTTGATTACCACAGGGATCGGCACGGAACAGCTGGAACAAGTGCTGGCACAGCGTTTTCCGCA
ATACAGCATTACTCGTATTGACCGTGACAGCACTGCCCGTAAAGGCTCGTTGGAACAACACCTTGCCGAAATCCAAGCAG
GCAAAAGCCAAATTTTGATCGGCACACAGATGTTAGCCAAAGGACACCATTTCCCGAATGTGACTTTAGTCGCCATCGTG
AATGTGGATAGTAGCCTGTTTTCCACCGATTACCGTGCAGAAGAACGTTTGGCACAGCTTTATGTACAAGTGTCAGGGCG
AGCAGGACGGGCGGAAAAGCAAGGGGAAGTAGTGTTACAAACGCATTACCCCGATCACCCGTTACTCACCAGCTTACTCA
ACGACGGCTACCTTGCCTTTGCCAGCCAAGCCTTAGCAATGCGAAAAATAATGAGCCTACCGCCGTTTTCTTCGCAAGTG
CTTATTCGTGCAACGGGTAGAGATAACGACAAAGTTGCAAATTTTCTGCAAGATTTGACCGCTTGTTTACACCAAATTAT
CAGCGAAAACGGCTGGCAAGGCTTTCAGTTACTTGGGCCTTTCAACGCCCCGATGGCAAAAAAAGCAGGGCATTATCGCT
GGCAGTTATTAATTCAACATTCGGCAAGAAGTGCGATCCAACAGTTGTTAGATCGTTTTGATGAGCAAAAAGAACAGTTC
CTGCGAAACGATATTCGACTGACGGTGGATATTGATCCGCAGGAGTTGGGGTAG

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(448-473)

Primosomal protein N C-terminal domain (PriA_C)

(635-733)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-101)

DEAD/DEAH box helicase (DEAD)

(221-367)

Helicase conserved C-terminal domain (Helicase_C)

(497-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

45.161

100

0.456

Multiple sequence alignment