Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EQB42_RS09145 Genome accession   NZ_LR129841
Coordinates   1746647..1747573 (-) Length   308 a.a.
NCBI ID   WP_000103697.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 947 isolate 947     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741647..1752573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB42_RS09120 treR 1742368..1743078 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQB42_RS09130 - 1743233..1744559 (+) 1327 Protein_1723 ISL3 family transposase -
  EQB42_RS09135 amiF 1744634..1745560 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQB42_RS09140 amiE 1745571..1746638 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQB42_RS09145 amiD 1746647..1747573 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  EQB42_RS09150 amiC 1747573..1749069 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  EQB42_RS09155 amiA3 1749136..1751115 (-) 1980 WP_000742232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34648.79 Da        Isoelectric Point: 9.7939

>NTDB_id=1116287 EQB42_RS09145 WP_000103697.1 1746647..1747573(-) (amiD) [Streptococcus pneumoniae strain 947 isolate 947]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSIR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1116287 EQB42_RS09145 WP_000103697.1 1746647..1747573(-) (amiD) [Streptococcus pneumoniae strain 947 isolate 947]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTATTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATCGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment