Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQB41_RS09635 Genome accession   NZ_LR129840
Coordinates   1798705..1799415 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793705..1804415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS09615 - 1794360..1794608 (-) 249 WP_000364990.1 YneF family protein -
  EQB41_RS09620 treC 1794750..1796375 (-) 1626 WP_000171203.1 alpha,alpha-phosphotrehalase -
  EQB41_RS09630 treP 1796553..1798520 (-) 1968 WP_000514352.1 PTS system trehalose-specific EIIBC component -
  EQB41_RS09635 treR 1798705..1799415 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQB41_RS09640 - 1799448..1800251 (-) 804 WP_000157659.1 ABC transporter ATP-binding protein -
  EQB41_RS12480 - 1800264..1801141 (-) 878 Protein_1832 ABC transporter permease -
  EQB41_RS09650 - 1801186..1801962 (-) 777 Protein_1833 ABC transporter substrate-binding protein -
  EQB41_RS09655 amiF 1802581..1803507 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=1116207 EQB41_RS09635 WP_000760673.1 1798705..1799415(+) (treR) [Streptococcus pneumoniae strain 4496 isolate 4496]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1116207 EQB41_RS09635 WP_000760673.1 1798705..1799415(+) (treR) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment