Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RIL182_RS08750 Genome accession   NZ_LR027880
Coordinates   1870302..1872155 (+) Length   617 a.a.
NCBI ID   WP_006857641.1    Uniprot ID   A0A6N3ANT0
Organism   Roseburia intestinalis L1-82     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865302..1877155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIL182_RS08730 (RIL182_01714) - 1865398..1866429 (-) 1032 WP_015520616.1 3-deoxy-7-phosphoheptulonate synthase -
  RIL182_RS08735 (RIL182_01715) aroD 1866631..1867383 (+) 753 WP_006857638.1 type I 3-dehydroquinate dehydratase -
  RIL182_RS08740 (RIL182_01716) - 1867496..1867984 (+) 489 WP_006857639.1 MarR family winged helix-turn-helix transcriptional regulator -
  RIL182_RS08745 (RIL182_01717) - 1867988..1870309 (+) 2322 WP_134523241.1 ABC transporter ATP-binding protein -
  RIL182_RS08750 (RIL182_01718) rcrQ 1870302..1872155 (+) 1854 WP_006857641.1 ABC transporter ATP-binding protein Regulator
  RIL182_RS08755 (RIL182_01719) - 1872331..1873296 (+) 966 WP_006857642.1 L-lactate dehydrogenase -
  RIL182_RS08760 (RIL182_01720) - 1873380..1874492 (+) 1113 WP_015520619.1 DUF4422 domain-containing protein -
  RIL182_RS08770 (RIL182_01722) - 1874827..1876164 (+) 1338 WP_242655579.1 SH3 domain-containing protein -
  RIL182_RS08775 (RIL182_01723) rluF 1876280..1877035 (+) 756 WP_006857644.1 23S rRNA pseudouridine(2604) synthase RluF -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68605.24 Da        Isoelectric Point: 7.0749

>NTDB_id=1116075 RIL182_RS08750 WP_006857641.1 1870302..1872155(+) (rcrQ) [Roseburia intestinalis L1-82]
MSNEREKVRMQHRGRGPMGRGMQPGEKPKDLKSSLGKLLSYIGNFKAAIIVVMIFAAASTVFNVIGPKTLGKATTALSEG
LMAKIQGTGSIDFTYIGQILLFVLGLYVCSAAFNFIQGWIMTGVTQKICYRMRKEISRKINRMPMKYFESRTYGEVLSRI
TNDVDTLGQGLNQSITTIITSVATLVGVLIMMLSISPLMTLIAIVILPISMALISFVVKKSQKYFKDQQEYLGHINGQVE
EVYGGHLVIKAFNREKDTIEEFNRTNEILYQSAWKSQFLSGMMQPIMMFVGNLGYAAVALSGGLLAIRGTITIGDIQAFI
QYVKNFTQPIQQIAQVINQVQSMAAASERVFEFLNEEEEDQTVEHPADVSAVTGTVDFDHVQFGYNPDQTIIKDFSAHVK
PGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGSIKLDGHDVRDFNRRELRDAFGMVLQDTWLFKGTIMENIRYGRLEATDE
EVIAAAKAAHADHFIKTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEVTIQKAMDNLMR
GRTSFVIAHRLSTIRNADLILVMKDGDIVEQGNHEELLEKNGFYANLYNSQFEDVVA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=1116075 RIL182_RS08750 WP_006857641.1 1870302..1872155(+) (rcrQ) [Roseburia intestinalis L1-82]
ATGAGTAATGAAAGAGAAAAAGTTAGAATGCAGCACCGTGGCAGAGGACCGATGGGGCGCGGCATGCAGCCGGGAGAAAA
ACCGAAGGATTTAAAGAGTTCTCTGGGAAAACTGTTATCTTACATTGGAAATTTTAAAGCTGCAATTATTGTAGTCATGA
TTTTTGCGGCGGCTTCCACGGTATTTAATGTAATCGGGCCTAAGACTTTAGGAAAGGCAACCACAGCGCTCTCCGAAGGA
CTGATGGCAAAGATCCAGGGCACGGGAAGCATCGATTTTACCTATATCGGACAGATCCTTTTATTTGTGTTAGGGCTTTA
TGTGTGCAGTGCGGCATTTAACTTTATCCAGGGCTGGATTATGACCGGTGTAACGCAGAAGATCTGCTACCGCATGCGTA
AAGAAATCTCCAGGAAAATCAACCGCATGCCGATGAAGTATTTTGAGAGCCGTACTTACGGAGAAGTTTTATCGAGAATC
ACCAATGATGTCGATACCTTAGGACAGGGATTAAACCAGAGTATCACAACGATCATCACGTCGGTTGCAACCTTAGTCGG
GGTGCTGATCATGATGTTAAGTATCTCCCCGTTAATGACGCTGATTGCAATCGTGATCCTGCCGATCTCCATGGCACTGA
TCTCATTTGTGGTCAAAAAATCCCAGAAATACTTCAAAGACCAGCAGGAATATTTAGGTCATATCAATGGACAGGTCGAG
GAGGTTTATGGCGGGCATTTAGTCATCAAGGCATTCAACCGTGAGAAAGACACGATTGAGGAATTTAACCGCACCAATGA
GATTTTATATCAGTCCGCATGGAAATCACAGTTTTTGTCAGGTATGATGCAGCCGATCATGATGTTTGTCGGAAACCTCG
GTTACGCAGCAGTGGCTTTATCCGGTGGACTGCTTGCAATCCGTGGAACGATCACGATCGGTGATATCCAGGCATTTATC
CAGTATGTAAAAAACTTCACACAGCCGATCCAGCAGATTGCACAGGTCATCAATCAGGTACAGTCGATGGCGGCAGCATC
TGAGCGTGTGTTTGAGTTTTTAAATGAGGAAGAGGAAGATCAGACCGTAGAACATCCGGCAGATGTGAGTGCCGTAACCG
GAACCGTCGATTTTGATCATGTACAGTTTGGTTACAACCCGGATCAGACGATCATCAAAGATTTCAGTGCACATGTCAAA
CCGGGGCAGAAGATTGCAATCGTTGGGCCGACCGGCGCAGGAAAGACTACGATGGTAAAGCTTCTGATGCGTTTTTATGA
TGTAAACAGCGGTTCCATCAAATTAGACGGTCATGATGTCAGGGATTTTAACCGCAGGGAATTAAGAGATGCGTTTGGAA
TGGTATTGCAGGATACCTGGCTGTTTAAGGGAACGATCATGGAAAATATCCGTTACGGACGTTTAGAAGCTACAGATGAA
GAGGTCATTGCAGCGGCGAAAGCGGCACATGCTGACCACTTCATTAAGACACTTCCGGGTGGTTACCAGATGGAATTAAA
TGAGGATGCAAGCAATGTTTCACAGGGACAGAAGCAGCTCCTTACGATCGCAAGGGCAATCCTTGCGGACAATAAGATTT
TGATCCTCGATGAGGCAACATCTTCGGTTGATACGAGAACCGAGGTCACAATCCAGAAAGCGATGGATAATCTGATGCGT
GGCAGAACCAGTTTTGTCATTGCACACAGACTCTCAACGATCCGCAATGCGGATCTGATCCTTGTCATGAAGGACGGGGA
TATCGTGGAGCAGGGAAATCACGAAGAACTGCTTGAAAAAAATGGATTTTATGCAAATCTTTATAATTCACAGTTTGAGG
ATGTTGTTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(49-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3ANT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.877

94.976

0.493

Multiple sequence alignment