Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC1639_RS08980 Genome accession   NZ_LR025101
Coordinates   1917836..1918465 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate EC-1639     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912836..1923465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1639_RS08960 (EC1639_01792) ycbZ 1913224..1914984 (-) 1761 WP_001586869.1 Lon protease family protein -
  EC1639_RS08965 (EC1639_01793) matP 1915170..1915622 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC1639_RS08970 (EC1639_01794) ompA 1915699..1916751 (-) 1053 WP_001305912.1 porin OmpA -
  EC1639_RS08975 (EC1639_01795) sulA 1917108..1917617 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC1639_RS08980 (EC1639_01796) sxy/tfoX 1917836..1918465 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC1639_RS08985 (EC1639_01797) yccS 1918428..1920590 (-) 2163 WP_000875037.1 YccS family putative transporter -
  EC1639_RS08990 (EC1639_01798) yccF 1920600..1921046 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EC1639_RS08995 (EC1639_01799) helD 1921169..1923223 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1115660 EC1639_RS08980 WP_000839153.1 1917836..1918465(+) (sxy/tfoX) [Escherichia coli isolate EC-1639]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1115660 EC1639_RS08980 WP_000839153.1 1917836..1918465(+) (sxy/tfoX) [Escherichia coli isolate EC-1639]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment