Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC12536_RS09400 Genome accession   NZ_LR025099
Coordinates   1953916..1954512 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate EC-12536     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948916..1959512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC12536_RS09375 (EC12536_01830) - 1949107..1950864 (-) 1758 WP_021465042.1 Lon protease family protein -
  EC12536_RS09380 (EC12536_01831) matP 1951050..1951502 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  EC12536_RS09385 (EC12536_01832) ompA 1951635..1952705 (-) 1071 WP_002898408.1 porin OmpA -
  EC12536_RS09390 (EC12536_01833) sulA 1953058..1953567 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  EC12536_RS09400 (EC12536_01834) sxy/tfoX 1953916..1954512 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  EC12536_RS09405 (EC12536_01835) yccS 1954526..1956661 (-) 2136 WP_002898422.1 YccS family putative transporter -
  EC12536_RS09410 (EC12536_01836) - 1956679..1957125 (-) 447 WP_002898425.1 YccF domain-containing protein -
  EC12536_RS09415 (EC12536_01837) helD 1957250..1959304 (+) 2055 WP_134155857.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1115637 EC12536_RS09400 WP_004179217.1 1953916..1954512(+) (sxy/tfoX) [Klebsiella pneumoniae isolate EC-12536]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1115637 EC12536_RS09400 WP_004179217.1 1953916..1954512(+) (sxy/tfoX) [Klebsiella pneumoniae isolate EC-12536]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment