Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC7215_RS09090 Genome accession   NZ_LR025096
Coordinates   1904456..1905085 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate EC-7215     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899456..1910085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC7215_RS09070 (EC7215_02102) ycbZ 1899845..1901605 (-) 1761 WP_000156526.1 Lon protease family protein -
  EC7215_RS09075 (EC7215_02103) matP 1901791..1902243 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC7215_RS09080 (EC7215_02104) ompA 1902319..1903371 (-) 1053 WP_000750419.1 porin OmpA -
  EC7215_RS09085 (EC7215_02105) sulA 1903728..1904237 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC7215_RS09090 (EC7215_02106) sxy/tfoX 1904456..1905085 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC7215_RS09095 (EC7215_02107) yccS 1905048..1907210 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EC7215_RS09100 (EC7215_02108) yccF 1907220..1907666 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EC7215_RS09105 (EC7215_02109) helD 1907789..1909843 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1115614 EC7215_RS09090 WP_000839153.1 1904456..1905085(+) (sxy/tfoX) [Escherichia coli isolate EC-7215]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1115614 EC7215_RS09090 WP_000839153.1 1904456..1905085(+) (sxy/tfoX) [Escherichia coli isolate EC-7215]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment