Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KP980_RS02110 Genome accession   NZ_LR025088
Coordinates   442863..443459 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae isolate KP980     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 437863..448459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP980_RS02085 (KP980_00460) - 438055..439812 (-) 1758 WP_032414743.1 Lon protease family protein -
  KP980_RS02090 (KP980_00461) matP 439998..440450 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KP980_RS02095 (KP980_00462) ompA 440582..441652 (-) 1071 WP_002898408.1 porin OmpA -
  KP980_RS02100 (KP980_00463) sulA 442005..442514 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KP980_RS02110 (KP980_00464) sxy/tfoX 442863..443459 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  KP980_RS02115 (KP980_00465) yccS 443473..445608 (-) 2136 WP_002898422.1 YccS family putative transporter -
  KP980_RS02120 (KP980_00466) - 445626..446072 (-) 447 WP_002898425.1 YccF domain-containing protein -
  KP980_RS02125 (KP980_00467) helD 446197..448251 (+) 2055 WP_023342915.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1115558 KP980_RS02110 WP_004150836.1 442863..443459(+) (sxy/tfoX) [Klebsiella pneumoniae isolate KP980]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1115558 KP980_RS02110 WP_004150836.1 442863..443459(+) (sxy/tfoX) [Klebsiella pneumoniae isolate KP980]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment