Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BN2442_RS20830 Genome accession   NZ_LN999997
Coordinates   4258927..4259532 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4253927..4264532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN2442_RS20815 helD 4254144..4256198 (-) 2055 WP_000420505.1 DNA helicase IV -
  BN2442_RS20820 - 4256322..4256768 (+) 447 WP_001261222.1 YccF domain-containing protein -
  BN2442_RS20825 yccS 4256787..4258940 (+) 2154 WP_000950880.1 YccS family putative transporter -
  BN2442_RS20830 sxy/tfoX 4258927..4259532 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  BN2442_RS20835 sulA 4259749..4260258 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  BN2442_RS20840 ompA 4260615..4261667 (+) 1053 WP_001674965.1 porin OmpA -
  BN2442_RS20845 matP 4261739..4262191 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  BN2442_RS20850 - 4262377..4264137 (+) 1761 WP_000156454.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1115555 BN2442_RS20830 WP_001202375.1 4258927..4259532(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1115555 BN2442_RS20830 WP_001202375.1 4258927..4259532(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium isolate SO4698-09]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment