Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAMMD1_RS12100 Genome accession   NZ_LN999829
Coordinates   2590710..2591462 (-) Length   250 a.a.
NCBI ID   WP_052586398.1    Uniprot ID   -
Organism   Bacillus velezensis strain B25     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2585710..2596462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS12075 (BAMMD1_2438) mreC 2586145..2587008 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  BAMMD1_RS12080 (BAMMD1_2439) mreB 2587039..2588052 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAMMD1_RS12085 (BAMMD1_2440) radC 2588144..2588839 (-) 696 WP_003152646.1 RadC family protein -
  BAMMD1_RS12090 (BAMMD1_2441) - 2588871..2589440 (-) 570 WP_014305513.1 Maf family protein -
  BAMMD1_RS12095 (BAMMD1_2442) - 2589582..2590583 (-) 1002 WP_057080448.1 SPOR domain-containing protein -
  BAMMD1_RS12100 (BAMMD1_2443) comC 2590710..2591462 (-) 753 WP_052586398.1 prepilin peptidase Machinery gene
  BAMMD1_RS12105 (BAMMD1_2444) - 2591602..2592894 (-) 1293 WP_052586400.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BAMMD1_RS12110 (BAMMD1_2445) - 2592953..2595595 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  BAMMD1_RS12115 (BAMMD1_2446) - 2596048..2596239 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27053.67 Da        Isoelectric Point: 9.0703

>NTDB_id=1115439 BAMMD1_RS12100 WP_052586398.1 2590710..2591462(-) (comC) [Bacillus velezensis strain B25]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQGGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1115439 BAMMD1_RS12100 WP_052586398.1 2590710..2591462(-) (comC) [Bacillus velezensis strain B25]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATCCTGCAAGGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGAATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment