Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAMMD1_RS06795 Genome accession   NZ_LN999829
Coordinates   1352722..1353318 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain B25     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347722..1358318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS06765 (BAMMD1_1350) - 1347936..1348391 (+) 456 WP_003154599.1 flavodoxin -
  BAMMD1_RS06770 (BAMMD1_1351) dapD 1348473..1349183 (+) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BAMMD1_RS06775 (BAMMD1_1352) - 1349254..1350378 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  BAMMD1_RS06780 (BAMMD1_1353) - 1350439..1350684 (+) 246 WP_003154596.1 YkuS family protein -
  BAMMD1_RS06785 (BAMMD1_1354) - 1350718..1351524 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  BAMMD1_RS06790 (BAMMD1_1355) - 1351812..1352270 (+) 459 WP_060387295.1 TlpA family protein disulfide reductase -
  BAMMD1_RS06795 (BAMMD1_1356) rok 1352722..1353318 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BAMMD1_RS06800 (BAMMD1_1357) - 1353339..1354331 (-) 993 WP_014304925.1 hypothetical protein -
  BAMMD1_RS06805 (BAMMD1_1358) - 1354477..1355079 (+) 603 WP_060386913.1 molybdenum cofactor guanylyltransferase -
  BAMMD1_RS06810 (BAMMD1_1359) - 1355131..1356150 (+) 1020 WP_060386914.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAMMD1_RS06815 (BAMMD1_1360) glp 1356168..1357460 (+) 1293 WP_057079981.1 gephyrin-like molybdotransferase Glp -
  BAMMD1_RS06820 (BAMMD1_1361) mobB 1357421..1357942 (+) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=1115415 BAMMD1_RS06795 WP_003154591.1 1352722..1353318(+) (rok) [Bacillus velezensis strain B25]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1115415 BAMMD1_RS06795 WP_003154591.1 1352722..1353318(+) (rok) [Bacillus velezensis strain B25]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment