Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAMMD1_RS06695 Genome accession   NZ_LN999829
Coordinates   1336859..1337323 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain B25     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331859..1342323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS06680 (BAMMD1_1330) - 1332338..1334158 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  BAMMD1_RS06685 (BAMMD1_1331) - 1334174..1335354 (-) 1181 Protein_1317 aminotransferase A -
  BAMMD1_RS19375 (BAMMD1_1332) - 1335555..1335716 (-) 162 WP_007409608.1 hypothetical protein -
  BAMMD1_RS06690 (BAMMD1_1333) cheV 1335905..1336816 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  BAMMD1_RS06695 (BAMMD1_1334) kre 1336859..1337323 (-) 465 WP_003154622.1 YkyB family protein Regulator
  BAMMD1_RS06700 (BAMMD1_1335) - 1337446..1338738 (-) 1293 WP_024085236.1 MFS transporter -
  BAMMD1_RS06705 (BAMMD1_1336) - 1338814..1339308 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  BAMMD1_RS06710 (BAMMD1_1337) - 1339383..1340246 (-) 864 WP_025851492.1 metallophosphoesterase -
  BAMMD1_RS06715 (BAMMD1_1338) fadH 1340390..1341154 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  BAMMD1_RS19175 - 1341264..1341812 (+) 549 Protein_1325 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1115414 BAMMD1_RS06695 WP_003154622.1 1336859..1337323(-) (kre) [Bacillus velezensis strain B25]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1115414 BAMMD1_RS06695 WP_003154622.1 1336859..1337323(-) (kre) [Bacillus velezensis strain B25]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment