Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BN2458_RS09115 Genome accession   NZ_LN907858
Coordinates   1830501..1830932 (-) Length   143 a.a.
NCBI ID   WP_034342423.1    Uniprot ID   A0A099UIV3
Organism   Helicobacter typhlonius strain MIT 97-6810 isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825501..1835932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN2458_RS09100 (BN2458_PEG2023) ybeY 1827359..1828000 (+) 642 WP_052082070.1 rRNA maturation RNase YbeY -
  BN2458_RS09105 (BN2458_PEG2024) - 1828420..1829061 (-) 642 WP_034325388.1 TetR/AcrR family transcriptional regulator -
  BN2458_RS09110 (BN2458_PEG2026) yedE 1829330..1830385 (-) 1056 WP_034342421.1 YedE family putative selenium transporter -
  BN2458_RS09115 (BN2458_PEG2027) dprB 1830501..1830932 (-) 432 WP_034342423.1 Holliday junction resolvase RuvX Machinery gene
  BN2458_RS09120 (BN2458_PEG2029) - 1831067..1831897 (-) 831 WP_034325391.1 DNA-processing protein DprA -
  BN2458_RS09125 (BN2458_PEG2030) - 1831894..1832886 (-) 993 WP_231944786.1 divergent polysaccharide deacetylase family protein -
  BN2458_RS09130 (BN2458_PEG2031) minE 1832891..1833127 (-) 237 WP_034325392.1 cell division topological specificity factor MinE -
  BN2458_RS09135 (BN2458_PEG2032) minD 1833124..1833939 (-) 816 WP_034342426.1 septum site-determining protein MinD -
  BN2458_RS09140 (BN2458_PEG2033) - 1833998..1835512 (-) 1515 WP_138128798.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16105.48 Da        Isoelectric Point: 7.3527

>NTDB_id=1115267 BN2458_RS09115 WP_034342423.1 1830501..1830932(-) (dprB) [Helicobacter typhlonius strain MIT 97-6810 isolate]
MKEINILACDVGLKRIGIAILKEGIILPLEPISRHNRNQAAKELDNVLKERDIHILVVGIPSGGEAEHSDMQKRISHFIS
LLSFEGEICFVNEDYTSSNALQSLSYMKRQNRAKAQKDGRIDSLSACEILQRYMQSHNITQST

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1115267 BN2458_RS09115 WP_034342423.1 1830501..1830932(-) (dprB) [Helicobacter typhlonius strain MIT 97-6810 isolate]
ATGAAAGAGATAAATATCTTAGCGTGTGATGTGGGGTTGAAGCGCATAGGGATAGCAATTCTTAAAGAGGGAATTATTTT
GCCTTTAGAGCCTATTTCGCGCCACAATCGTAATCAAGCTGCAAAAGAGCTTGATAATGTTCTCAAAGAGCGCGACATAC
ACATACTTGTCGTGGGAATACCAAGCGGCGGGGAAGCAGAGCATAGTGATATGCAAAAGCGCATCTCTCATTTTATCTCC
CTTCTTAGTTTTGAGGGTGAGATTTGCTTTGTCAATGAGGACTATACAAGCTCTAATGCTTTGCAATCTCTCTCTTATAT
GAAAAGGCAAAATCGTGCCAAAGCTCAAAAAGATGGGCGCATAGATTCTCTAAGTGCGTGTGAAATCTTGCAACGATATA
TGCAATCACACAATATTACACAATCTACTTAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(6-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

56.154

90.909

0.51

Multiple sequence alignment